Pairwise Alignments

Query, 238 a.a., two-component system response regulator ArcA from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., transcriptional regulatory protein OmpR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (354), Expect = 2e-38
 Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 7/237 (2%)

Query: 2   QTPQILIVEDEQVTRNTLKSIFEAEGYAVFEASNGEEMHQVLSDYPINLVIMDINLPGKN 61
           +T +IL+V+D+   R  L+     +GY V  A+N E+M ++L     +L+++D+ LPG++
Sbjct: 4   ETSKILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGED 63

Query: 62  GLLLARELREQAD-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
           GL + R LR+Q   + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL  R + ++ R
Sbjct: 64  GLSICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123

Query: 121 SMH--AGTTQEEKRSVEKYVFNGWELDINSRSLVSPDGDSYKLPRSEFRALLHFCENPGK 178
                 G   +++  +    F  + LD+ +R +   D ++  L   EF  L     +P +
Sbjct: 124 QTQDVPGAPAQQEAEIR---FGEFSLDLATREMYHGD-EAIVLTSGEFAVLKVLVTHPRE 179

Query: 179 IQTRADLLKKMTGRELKPHDRTVDVTIRRIRKHFESVSGTPEIIATIHGEGYRFCGD 235
             +R  L+    GR+    +R++DV + R+R+  E     P  I T+ G GY F  D
Sbjct: 180 PLSRDKLMNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPD 236