Pairwise Alignments

Query, 238 a.a., two-component system response regulator ArcA from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., torcad operon transcriptional regulatory protein TorR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  182 bits (461), Expect = 7e-51
 Identities = 98/238 (41%), Positives = 148/238 (62%), Gaps = 11/238 (4%)

Query: 6   ILIVEDEQVTRNTLKSIFEAEGYAVFEASNGEEMHQVLSDYPINLVIMDINLPGKNGLLL 65
           +L+V+DE V R  LK  FE EGY V EA++GE+M    +   I+L+++DINLPG +GL L
Sbjct: 5   VLVVDDEVVIRARLKGYFEKEGYRVVEAADGEQMWYEFNRQHIDLIMLDINLPGVDGLSL 64

Query: 66  ARELREQADVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR----- 120
            RELR ++ V ++ ++GRD  +DKI+GLE+GADDY+TKPF  REL +R +NLL R     
Sbjct: 65  TRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVK 124

Query: 121 SMHAGTTQEEKRSVEKYVFNGWELDINSRSLVSPDGDSYKLPRSEFRALLHFCENPGKIQ 180
                  QE  +  +   F G++L++NSR L   + +  KL ++EF  L  F  +P ++ 
Sbjct: 125 QAEQALVQELSQPDDLISFEGYQLELNSRKLRQGE-ELIKLTKAEFELLTVFVLHPQQVL 183

Query: 181 TRADLLKKMTGRELKPHDRTVDVTIRRIRKHFESVSGTPEIIATIHGEGYRFCGDLED 238
           +R  L+++ + R    +DRT+DV IRR+R    +     E+  T+HGEGY F   ++D
Sbjct: 184 SRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLHA-----ELFVTVHGEGYLFAAKVDD 236