Pairwise Alignments

Query, 286 a.a., endonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., endonuclease IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  157 bits (397), Expect = 3e-43
 Identities = 105/283 (37%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 5   LIGAHVSASGGVELAPVRAHEIGANAFALFTKNQRQWAAKPLEASSIRAFKANCKKWGFG 64
           L GAH+SA+GGV  A     EIG     LFT NQRQW  K    + + AF    ++  FG
Sbjct: 3   LFGAHMSAAGGVSNAIRDIVEIGGEVLQLFTANQRQWTPKAPSEADVEAFGR--RRAAFG 60

Query: 65  SEAILPHDSYLINLGAPEPEKLDKSRAAFVDEMLRCDQLGLTLLNFHPGSHLQQVSEEAC 124
              +  H SYLIN+   +     K+  A V E  RC  LG+  +  HPG+HL        
Sbjct: 61  GP-VFSHASYLINIANGDGAASAKAVEALVREFERCTALGVDAVVLHPGAHLGAGRGTGI 119

Query: 125 LAT---IAESINLAHRQVPNVIAVIENTAGQGSNLGWRFEHLAAIIDQVEDKERVGVCLD 181
           L     I E  +    Q P  + ++ENTAGQG+ LG     LA IID      ++GVCLD
Sbjct: 120 LRAARNIDEVFDRCGGQTP--VLLLENTAGQGTCLGGDLNDLAEIIDASRHASQLGVCLD 177

Query: 182 TCHTFAAGYDLRTKAACDETFAEFERVVGMHYLRAMHINDSKGKLASRVDRHHSLGMGEI 241
           T H F AGY L T         + E   G+  +R  H+NDS     SR DRH  +G G++
Sbjct: 178 TAHAFGAGYALHTDEGYRRCMEDIEHGPGLAAVRLFHVNDSLVPCGSRKDRHTHIGEGQL 237

Query: 242 GWECFEYIAQDARFNGIPLILETIDPDIWATE---IATLRKFS 281
           G   F  +  D  F   P++LET   D  A +   +ATLR+ +
Sbjct: 238 GEAAFVRLLNDPVFAMHPMVLETPKEDGHAADRRNLATLRRLA 280