Pairwise Alignments

Query, 476 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., amino acid carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  567 bits (1460), Expect = e-166
 Identities = 288/466 (61%), Positives = 358/466 (76%), Gaps = 8/466 (1%)

Query: 5   INLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRHFTHTFTVLKNSRKADNAGISSFQAL 64
           IN +N +LWGS+L+Y+LV  G+ FTLRLGFIQ R F H   ++   R+  N GISSFQ  
Sbjct: 13  INAVNGMLWGSVLIYVLVAAGVLFTLRLGFIQLRMFGHGSKLVLQGREKTN-GISSFQVF 71

Query: 65  CTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRDKDGN 124
           CTS+AARVGTGNMAGVAVA+T GG GA+FWMWLIA+LGMAT+F ESTLAQ+YK +D DG 
Sbjct: 72  CTSMAARVGTGNMAGVAVAITVGGAGAVFWMWLIALLGMATAFIESTLAQVYKVKDSDGQ 131

Query: 125 YRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNAVQANSITNAMKTAFGFEPMLIGIG 184
           YRGGPAYYME+GLG RWMG LFS+ LIIAFG  FNA QAN++T+A+  AFG +  ++G+ 
Sbjct: 132 YRGGPAYYMEQGLGKRWMGSLFSVLLIIAFGFAFNAAQANTMTDALNNAFGLDKTMVGLV 191

Query: 185 IVLLTAFVIFGGIRKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDAISLIFKSAFGL 244
           IV + A++I GG++K+A+ +ELIVP MA AYLAIAL V+VMN E+VP A++ I KSAFG 
Sbjct: 192 IVAVAAYIISGGLKKVAKASELIVPVMAVAYLAIALIVLVMNLEQVPAALAYIVKSAFGW 251

Query: 245 QEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVF 304
           +EAA G +G     AM+ G+ RGLFSNEAGMGSA N AASA+P P HPASQG+VQM+GVF
Sbjct: 252 EEAAGGAMG-----AMMAGIARGLFSNEAGMGSAANIAASASPNPNHPASQGFVQMIGVF 306

Query: 305 IDTIVICTATVAIILMSGEYVPHGELTGIELTQRALSSQVGDWGGIFIAFAIFFFAFTSI 364
           +DTIVIC+AT AIIL+SG     GE  GI L Q AL+++VG W   F+AFAI  F F+SI
Sbjct: 307 VDTIVICSATAAIILLSGVLDAPGEQKGIGLLQLALTNEVGGWAAYFVAFAIILFCFSSI 366

Query: 365 IANYSYAETNLIFLEHNNKKGLVLFRLVFLGMVMFGSLATLPTVWAMADVSMGLMAIVNL 424
           IANYSYAE+N++FL   +KK L +FR + L MVM GS+A+L  VW  ADVSMGLMA+VN+
Sbjct: 367 IANYSYAESNIMFLS-RSKKVLYIFRALVLAMVMAGSVASLQLVWNFADVSMGLMALVNI 425

Query: 425 VAILLLSGIVIKLAKDYNRQLDAGKVPTFDANDYPELKSQLEDGIW 470
            AI++LS +   + KDY  QL AGKVPTFDA  +PEL   L++ IW
Sbjct: 426 AAIVMLSKVAFAVIKDYEVQLKAGKVPTFDAAHFPELNG-LDEKIW 470