Pairwise Alignments

Query, 476 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., amino acid carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  315 bits (806), Expect = 3e-90
 Identities = 176/440 (40%), Positives = 266/440 (60%), Gaps = 17/440 (3%)

Query: 4   LINLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRHFTHTFTVLKNSRKADNAG-ISSFQ 62
           L++ +N ++WG I + LLVG G+Y TLRL  IQ         +L   + A   G +SSF 
Sbjct: 6   LLSEINAIVWGPITLCLLVGTGLYLTLRLRLIQVFKLPLALRLL--FKPASGQGDLSSFA 63

Query: 63  ALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRDKD 122
           ALCT+L+A +GTGN+ GVA A+  GGPGA+FWMWL A  GMAT + E  LA  Y+T D  
Sbjct: 64  ALCTALSATIGTGNIVGVATAIKVGGPGALFWMWLAAFFGMATKYGECMLALKYRTTDAR 123

Query: 123 GNYRGGPAYYMEKGLGMRWMGVLFSIFLI-IAFGLVFNAVQANSITNAMKTAFGFEPMLI 181
           GN  GGP YY+E+GLG+ W+  LF++F + +AF  +    Q N+I++AM  AF     + 
Sbjct: 124 GNIAGGPMYYIERGLGLGWLAKLFALFGVGVAFFGIGTFAQVNAISDAMTIAFHVPAWVT 183

Query: 182 GIGIVLLTAFVIFGGIRKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDAISLIFKSA 241
            + + LL A V  GG+++IA+ A+ +VP MA  Y+   L+++V   E++  A+ L+  SA
Sbjct: 184 ALVLTLLVAAVTLGGVKRIAKVAQKLVPSMALGYVLACLWILVTFSEQIIPALQLVIHSA 243

Query: 242 FGLQEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQML 301
           F    AA G LG  +AQA+  G+ RG+FSNE+G+GSAP AAA+A      P  QG V M 
Sbjct: 244 FSPISAAGGFLGATVAQAIQIGIARGVFSNESGLGSAPIAAAAAK--TKEPVEQGLVSMT 301

Query: 302 GVFIDTIVICTATVAIILMSGEYVPHGELTGIELTQRAL----SSQVGDWGGIFIAFAIF 357
           G F DT++ICT T  +++++G  V  G+  G  +T  A     S+ +G +    +  A+ 
Sbjct: 302 GTFFDTLLICTITGLVLIITG--VWSGDAAGAAMTSAAFATGGSAVIGQY---LVTIALV 356

Query: 358 FFAFTSIIANYSYAETNLIFLEHN--NKKGLVLFRLVFLGMVMFGSLATLPTVWAMADVS 415
            FAFT+I+  + Y E    +L  +   ++G+ +++ +FL ++  G+   L  +W +AD  
Sbjct: 357 CFAFTTILGWHYYGERCWYYLTGHKLGERGIKIYQFIFLSLIAVGAFIQLDLIWLLADTV 416

Query: 416 MGLMAIVNLVAILLLSGIVI 435
            GLMAI NL+A++ L  ++I
Sbjct: 417 NGLMAIPNLIALIGLRKVII 436