Pairwise Alignments

Query, 476 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., amino acid carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  310 bits (793), Expect = 9e-89
 Identities = 179/448 (39%), Positives = 272/448 (60%), Gaps = 14/448 (3%)

Query: 1   MTDLINLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRHFTHTFTVLKNSRKADN----- 55
           +T+ ++ +N  +WG+ ++ +++GVG++ +  L  +        F +L + R  D      
Sbjct: 4   ITEFVSTINGFVWGTPMLVMILGVGLFLSFGLRLMPILKLGTGFKLLWSGRIPDKDKQMK 63

Query: 56  AGISSFQALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQL 115
             IS F AL TSL+A +GTGN+AGVA A+  GGPGA+FWMW  A++GMAT F+E+ LA  
Sbjct: 64  GEISPFNALMTSLSATIGTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFSEAVLAVK 123

Query: 116 YKTRDKDGNYRGGPAYYMEKGLGMRW--MGVLFSIFLIIAFGLVFNAVQANSITNAMKTA 173
           Y+  D +GN+ GGP YY++ GLG +W  +G  F++F   A   + N VQANS+ +A+ + 
Sbjct: 124 YREVDDNGNHIGGPMYYIKNGLGSKWAWLGTAFALFGSFAGFGIGNTVQANSVADALNSN 183

Query: 174 FGFEPMLIGIGIVLLTAFVIFGGIRKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDA 233
           FG    + G+ +++L   V+ GGI++IA  A  +VP M   Y+A  L V+V+N   +PDA
Sbjct: 184 FGVPTWVTGLVLMVLVGAVLMGGIKRIADVAGKLVPLMTVFYIAAGLSVIVVNAAAIPDA 243

Query: 234 ISLIFKSAFGLQEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPA 293
           I+LI  SAF    A  G  G A+  A+  GV RG+FSNEAG+GSAP A A+A     +P 
Sbjct: 244 IALIVHSAFNPVAAQGGFAGAAVWAAVRFGVARGVFSNEAGLGSAPIAHAAA--QTNNPV 301

Query: 294 SQGYVQMLGVFIDTIVICTATVAIILMSGEYVPHGELTGIELTQRALSSQVGDWGGIFIA 353
           +QG V MLG FIDT+V+CT T   I++SG +   GE  G  LT  A S  +   G   +A
Sbjct: 302 AQGLVAMLGTFIDTLVVCTITGLAIVVSGAWT-SGE-NGAALTSYAFSHAL-PMGNYIVA 358

Query: 354 FAIFFFAFTSIIANYSYAETNLIFLEHNNKKGLVLFRLVFLGMVMFGSLATLPTVWAMAD 413
            A+  FAFT+I+    Y+E  + +L     + +  FR +++ +V  G++++L  +W +AD
Sbjct: 359 IALSIFAFTTILGWSVYSEKCVQYL--FGVRAVKPFRAIWVIVVPLGAVSSLDFIWLLAD 416

Query: 414 VSMGLMAIVNLVAILLLSGIVIKLAKDY 441
               +MAI NL+A+ LLS +V  L ++Y
Sbjct: 417 TLNAMMAIPNLIALSLLSPVVFGLTREY 444