Pairwise Alignments

Query, 476 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  392 bits (1007), Expect = e-113
 Identities = 200/468 (42%), Positives = 302/468 (64%), Gaps = 22/468 (4%)

Query: 1   MTDLINLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRHFTHTFTVLKNSRKADNAGISS 60
           M +++N +N+++W   LVYL +GVG++F+LR  F+Q RH      ++ + +  D AG+SS
Sbjct: 1   MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTD-AGVSS 59

Query: 61  FQALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRD 120
           FQAL  +LA RVGTGN+AGVA A+T GGPGA+FWMW++A LG +++F ESTL Q+YK + 
Sbjct: 60  FQALAMTLAGRVGTGNIAGVATAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKI 119

Query: 121 KDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNAVQANSITNAMKTAFGFEPML 180
            +G YRGGPA+Y+EKGLGM+W    F+I  I A G++   VQANSI  ++KTAF  +P +
Sbjct: 120 -NGEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGVLLPGVQANSIGASLKTAFDIDPNV 178

Query: 181 IGIGIVLLTAFVIFGGIRKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDAISLIFKS 240
               + +L  F+IFGG+++IA  A L+VPFMA  Y+ +A  ++ +N +++P  + LI KS
Sbjct: 179 TAAVLAMLLGFIIFGGVKRIANFATLVVPFMALGYIIVACVIIALNIDQLPGILWLIIKS 238

Query: 241 AFGLQEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQM 300
           AFG       G G  +  A++ GVKRG++SNEAG G+ P+A+++A     HPA QG VQ 
Sbjct: 239 AFGFD----AGFGAILGLAIMWGVKRGVYSNEAGQGTGPHASSAAA--VTHPAKQGLVQA 292

Query: 301 LGVFIDTIVICTATVAIILMSGEYVPHGE-----LTGIE-------LTQRALSSQVGDWG 348
             V+IDT+ +C+AT  ++L++G Y   G       TGI          Q A+ S +  +G
Sbjct: 293 FSVYIDTLFVCSATGFMLLITGLYNVQGPDGAALYTGIAGVAAGSGYVQTAMESMMPGFG 352

Query: 349 GIFIAFAIFFFAFTSIIANYSYAETNLIFLEHN-NKKGL-VLFRLVFLGMVMFGSLATLP 406
            +F+A A+FFFAFT+I+A Y  AETN+ ++    N+  L V+ +++ +   ++G++ T  
Sbjct: 353 NMFVAIALFFFAFTTIVAYYYIAETNIAYINRKVNRPWLTVMLKVIIMASTVYGTVKTAD 412

Query: 407 TVWAMADVSMGLMAIVNLVAILLLSGIVIKLAKDYNRQLDAGKVPTFD 454
             W M D+ +G+MA +N++AI+LL  +     KDY  Q   G  P FD
Sbjct: 413 LAWGMGDIGVGIMAWLNIIAIILLQKVAFTCLKDYESQQKQGIEPQFD 460