Pairwise Alignments

Query, 476 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., amino acid carrier protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  439 bits (1129), Expect = e-128
 Identities = 228/468 (48%), Positives = 317/468 (67%), Gaps = 13/468 (2%)

Query: 3   DLINLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRHFTHTFTVLKNSRKADNAG---IS 59
           + IN +ND+LW  IL+ +L+G  ++F++R  F+QFR       +L  S      G   +S
Sbjct: 2   NFINEINDILWTYILIIMLLGCAVWFSIRTRFVQFRMLREMIILLSESAGKGKQGEKHVS 61

Query: 60  SFQALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTR 119
           SFQA   ++A+RVGTGN+AGVA A+  GGPGA+FWMW+IA+LG +++F ESTLAQLYK R
Sbjct: 62  SFQAFAITIASRVGTGNLAGVATAIAIGGPGAVFWMWVIALLGASSAFIESTLAQLYKIR 121

Query: 120 DKDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNAVQANSITNAMKTAFGFEPM 179
            KD ++ GGPAYYM+KGL   WMG+LF++ + I FG  FN+VQ+N+I  A + AFGF   
Sbjct: 122 GKD-SFVGGPAYYMKKGLKQPWMGILFAVLISITFGFAFNSVQSNTICAAAEHAFGFNHT 180

Query: 180 LIGIGIVLLTAFVIFGGIRKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDAISLIFK 239
           ++G  +  LT  +IFGGIR+IA  + +IVP MA  Y+ +AL +V++N   +P+ ISLI  
Sbjct: 181 VLGGVLTALTLVIIFGGIRRIAHVSSIIVPVMALGYVGLALVIVLLNITHLPEVISLIIS 240

Query: 240 SAFGLQEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQ 299
            AFG ++A  GG+G A+ Q    G+KRGLFSNEAGMGSAPNAAA+A     HP  QG +Q
Sbjct: 241 HAFGWEQALGGGVGMALMQ----GIKRGLFSNEAGMGSAPNAAATAN--VTHPVKQGLIQ 294

Query: 300 MLGVFIDTIVICTATVAIILMSGEYVPHGELTGIELTQRALSSQVGDWGGIFIAFAIFFF 359
            L VF DT++ CT T  IIL SG  +  G   G++LTQ+AL++++G  G IF+A A+FFF
Sbjct: 295 TLAVFTDTLLNCTCTAFIILFSGAPL-DGSSNGVQLTQQALTNEIGASGSIFVAVALFFF 353

Query: 360 AFTSIIANYSYAETNLIFLEHNNKKGLVLFRLVFLGMVMFGSLATLPTVWAMADVSMGLM 419
           AF+SI+ NY Y E N+ F+    K  L  +R++  GMV+FGS+ATL  VW++AD++M LM
Sbjct: 354 AFSSILGNYYYGEANIRFIT-AKKWVLHTYRILVSGMVLFGSVATLDLVWSLADITMALM 412

Query: 420 AIVNLVAILLLSGIVIKLAKDYNRQLDAG-KVPTFDANDYPELKSQLE 466
           A+ NL+AI+ L    I+L  DY  Q  AG + P F     P+++  LE
Sbjct: 413 AVCNLIAIIFLGKYAIRLLSDYRAQKKAGIQSPVFRKETMPDIEKDLE 460