Pairwise Alignments

Query, 476 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., amino acid carrier protein (RefSeq) from Shewanella sp. ANA-3

 Score =  320 bits (820), Expect = 6e-92
 Identities = 181/451 (40%), Positives = 266/451 (58%), Gaps = 15/451 (3%)

Query: 4   LINLMNDLLWGSILVYLLVGVGIYFTLRLGFIQFRHFTHTFTVLKNSRKADNAGISSFQA 63
           L++ +N ++WG + + LLVG GIY TLRL  IQ         +L    K  +  +SSF A
Sbjct: 6   LLSSLNGIVWGPVTLCLLVGTGIYLTLRLRLIQVFRLPMALGLLFKPAKG-HGDLSSFAA 64

Query: 64  LCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRDKDG 123
           LCT+L+A +GTGN+ GVA A+  GGPGA+FWMWL A  GMAT +AE  LA  Y+T D  G
Sbjct: 65  LCTALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYRTTDARG 124

Query: 124 NYRGGPAYYMEKGLGMRWMGVLFSIFLI-IAFGLVFNAVQANSITNAMKTAFGFEPMLIG 182
              GGP YY+E+GLG+ WM  LF++F + +AF  +    Q N+I++A+  AF        
Sbjct: 125 QIAGGPMYYIERGLGLHWMAKLFALFGVGVAFFGIGTFAQVNAISDALTIAFEVPTWATA 184

Query: 183 IGIVLLTAFVIFGGIRKIARTAELIVPFMAFAYLAIALFVVVMNYEKVPDAISLIFKSAF 242
           + + LL A V  GG+++I+  A+ +VP M+  Y+   ++++V   E +  A+ L+ +SAF
Sbjct: 185 LVLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVLACVWILVSFAESILPALQLVVESAF 244

Query: 243 GLQEAAAGGLGYAIAQAMINGVKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLG 302
               AA G LG  +AQA+  G+ RG+FSNE+G+GSAP AAA+A      P  QG V M G
Sbjct: 245 TPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAAAK--TNEPVEQGLVSMTG 302

Query: 303 VFIDTIVICTATVAIILMSGEYVPHGELTGIELTQRALS-SQVGDWGGIFIAFAIFFFAF 361
            F DTI+ICT T  +++++G  V  G+  G  +T  A S       G   +  A+  FAF
Sbjct: 303 TFFDTIIICTITGLVLIITG--VWSGDTAGAAMTSAAFSLGGSAAIGQYLVTIALVCFAF 360

Query: 362 TSIIANYSYAETNLIFLEHNNKKGLVLFRLVFLGMVMFGSLATLPTVWAMADVSMGLMAI 421
           T+I+  + Y E    +L    ++GL  ++++FLG++  G+   L  +W +AD   GLMAI
Sbjct: 361 TTILGWHYYGERCWYYLV--GERGLRAYQMLFLGLIAVGAFIKLDVIWLLADTVNGLMAI 418

Query: 422 VNLVAILLLSGIVIKLAKDY------NRQLD 446
            NL+AI+ L  ++I   + Y      NR LD
Sbjct: 419 PNLIAIIGLRHVIIAETQSYFVRTLSNRTLD 449