Pairwise Alignments

Query, 418 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  394 bits (1013), Expect = e-114
 Identities = 211/414 (50%), Positives = 289/414 (69%), Gaps = 13/414 (3%)

Query: 3   LFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDA 62
           +  S++G+ VLLG+ +L S NR  I+ R V GAF I  +L  F+L    G ++L   S+ 
Sbjct: 1   MIQSILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNT 60

Query: 63  VSNVINYGNDGTSFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQ 122
           V  V  YG +G  F FG LV+   F V  G GF++A +VLP +IF +AL S+LYYLG+MQ
Sbjct: 61  VGKVFGYGTEGIKFAFGSLVN---FSV-EGIGFVWALQVLPQIIFTAALTSLLYYLGIMQ 116

Query: 123 WVIRILGGGLQKALGTSRAESMSAAANIFVGQTEAPLVVRPFVPKMTQSELFAVMCGGLA 182
           W + I+GG LQK LGTSRAESM+AA NI +GQTEAPL+++P+   +T++++FAVM GGL+
Sbjct: 117 WFVLIIGGSLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLS 176

Query: 183 SIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDITLDGGDDKP 242
           SIAG +LAG A MGV + YL+ A FM+AP GL+FAKL++PETE P  NE   L   D+KP
Sbjct: 177 SIAGSILAGLAGMGVALNYLIMACFMSAPAGLMFAKLLIPETE-PTVNEVPELP-DDEKP 234

Query: 243 ANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWL 302
           ++ IDA A GA AG+ +A  VGA++IA IGL+AL+NG LG IG  FGMP L ++M+LG L
Sbjct: 235 SSFIDAIAKGAIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMILGTL 294

Query: 303 FAPLAFLIGVPWNEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFA 362
           FAP+A+LIG+PW EA+ AG F+G K   NEFVA++           V LS ++ AI++ A
Sbjct: 295 FAPVAWLIGIPWVEASTAGAFLGQKIAMNEFVAFANM-------GNVELSARSNAIMTIA 347

Query: 363 LCGFANLSSIAILLGGLGSLAPKRRGDIARMGVKAVIAGTLSNLMAATIAGFFL 416
           LCGFAN+ S+A++ G L  + P+R G I ++G+K ++A TL+NLM A I   F+
Sbjct: 348 LCGFANIGSVAMVCGALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401