Pairwise Alignments

Query, 418 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  392 bits (1008), Expect = e-114
 Identities = 201/417 (48%), Positives = 285/417 (68%), Gaps = 13/417 (3%)

Query: 1   MSLFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFS 60
           MS  MS IG+AVL+ I  L S N++ I  +T+ GA A+Q  LGAF+++VP G  ++   S
Sbjct: 1   MSTIMSCIGIAVLVFIGYLFSENKRQIKFKTIAGALALQILLGAFVMFVPAGVTIIEAMS 60

Query: 61  DAVSNVINYGNDGTSFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGV 120
             V++VI + N G +F+FG L + K+       GF+F   VL  +IF SALISVLYYL V
Sbjct: 61  SGVNSVIAFSNSGLTFVFGDLANYKL-------GFVFVINVLCVVIFISALISVLYYLKV 113

Query: 121 MQWVIRILGGGLQKALGTSRAESMSAAANIFVGQTEAPLVVRPFVPKMTQSELFAVMCGG 180
           MQ++I I+GGGL K LGTS+AES+SA ANIFVG  EAP +VRP V  MT+SELFAVM GG
Sbjct: 114 MQFIINIIGGGLSKVLGTSKAESLSATANIFVGPIEAPSMVRPLVKNMTRSELFAVMTGG 173

Query: 181 LASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDITLDGGDD 240
           LAS+AGG + GY ++G+  +Y++ A FM AP GLLFAKL+ P+TE    N D  ++   D
Sbjct: 174 LASVAGGTMVGYINLGIDPKYILTACFMTAPAGLLFAKLLCPQTEHNLVNNDNKIEDA-D 232

Query: 241 KPANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLG 300
           +P  +++A   G+  G+   + V A+L++F+ +IAL+NG++G IG  F + +L LEM++G
Sbjct: 233 QPKGLLEAITDGSLMGMNQVITVTALLVSFVAIIALLNGIIGSIGNLFSIDKLTLEMIIG 292

Query: 301 WLFAPLAFLIGVPWNEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIIS 360
           +L +PLAFL+GVPW+EA  A   IG K   NEFVAY  F           LS+KT+AI+ 
Sbjct: 293 YLLSPLAFLMGVPWSEAIPAASIIGQKIAINEFVAYISFLEVSN-----TLSDKTQAIVV 347

Query: 361 FALCGFANLSSIAILLGGLGSLAPKRRGDIARMGVKAVIAGTLSNLMAATIAGFFLS 417
           F+LCGFAN+ S+A+++GG+ ++ P +R  I ++G + ++A  L+NLM+ TIAG  +S
Sbjct: 348 FSLCGFANIGSLAMVVGGIAAMCPDKRELITQIGPRVLLAAILANLMSGTIAGALVS 404