Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., DNA repair protein RadA (RefSeq) from Shewanella loihica PV-4

 Score =  372 bits (954), Expect = e-107
 Identities = 203/458 (44%), Positives = 295/458 (64%), Gaps = 11/458 (2%)

Query: 1   MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAK 60
           M K K AYVC+ECG DFPRWQGQCNACG WN+ISEVRLA +   A +  + GYAGA+   
Sbjct: 1   MAKNKTAYVCSECGQDFPRWQGQCNACGEWNTISEVRLAPAKSSAGS--VAGYAGAVGGG 58

Query: 61  VQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ 120
            + L++++  E  +  +G  ELDRVL GG+  G+  +I G+PGAGK+T+L   +  +S  
Sbjct: 59  SKKLSEVEEFEAKKLLTGIGELDRVLCGGLTTGSVNIISGDPGAGKTTILSDLVSRMSQL 118

Query: 121 MPTLYVTGEESLQQVAMRASRLGLP--KQHLKMLSETNVDRICQIAEQEKPRIMVIDSIQ 178
           MP+LY T EESL Q   R +RL L   +++L +++ETNV+ I    E ++ +  VIDSIQ
Sbjct: 119 MPSLYCTAEESLSQFKNRVNRLRLDCNEENLYLMAETNVEAIIAELEAKQVKFAVIDSIQ 178

Query: 179 VMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCS 238
            +       SPGS +QV+ SA ALT+Y KQNNV +F+V HV K+   AGP+ L HI+DC 
Sbjct: 179 AVVTDLANGSPGSPSQVKGSAQALTQYCKQNNVTMFLVAHVNKNNETAGPQTLIHIVDCL 238

Query: 239 ILLDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSV 298
             L+ + D + RTLR++KNRFG V+ +G+F MT +GM  V NPS IFLS     + G+++
Sbjct: 239 THLECN-DGQVRTLRANKNRFGDVDTVGIFRMTERGMLSVDNPSEIFLSGSTTESPGAAI 297

Query: 299 MVVWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFV 358
             + +G R LL+EIQ L   ++   P+RV VGL  NR+ +L  +L KH   ++   D + 
Sbjct: 298 TCIRKGNRNLLLEIQCLTTEAEGEFPQRVCVGLNMNRIKMLTGILRKHTRTKIY-HDTYF 356

Query: 359 NVVGGVKV--TETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERLNE 416
           N+VGG+K+  +ET  DLAL+ ALLSS  +  +P+   + GE+ L G++RP+ SG  R+ E
Sbjct: 357 NLVGGLKIDESETCIDLALVAALLSSLNEFVVPRTTCIMGELSLNGDVRPIDSGVPRVKE 416

Query: 417 AFKHGFKKAIVPIANMPKGGIEGM--QIHGVKKLSDAI 452
           A +HGF +  +P  N  K  +EG+  +I+ +K + + +
Sbjct: 417 AVQHGFTEIFIPFRNYHK-SMEGLGAKINPIKTIHELL 453