Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  661 bits (1705), Expect = 0.0
 Identities = 331/455 (72%), Positives = 394/455 (86%), Gaps = 3/455 (0%)

Query: 1   MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRL-AASPQVARNERLVGYAGALEA 59
           M K K AYVCNECG DFPRWQGQC+AC  WN+I+EVRL AASP   R  +  GYAGA  +
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASP--GRGTKFAGYAGAGSS 58

Query: 60  KVQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSG 119
           +V+TL  IDL  +PR  S F ELDRVLGGGIVPG+AILIGG+PGAGKSTLLLQT+C L+ 
Sbjct: 59  EVKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAE 118

Query: 120 QMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAEQEKPRIMVIDSIQV 179
           QMP LYVTGEESLQQVAMRA RLGLP   L+MLSET+V++IC+IA QE P+++V+DSIQV
Sbjct: 119 QMPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQV 178

Query: 180 MHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSI 239
           MH++DV SSPGSV+QVRESA+ LTR+AKQ+ +AV +VGHVTKDG+LAGPKVLEH IDCS+
Sbjct: 179 MHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSV 238

Query: 240 LLDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSVM 299
           + +GD+DSR+RTLRSHKNRFGA+NELGVFAMT +G++EV+NPSAIFLSRGEE +SGS VM
Sbjct: 239 MFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVM 298

Query: 300 VVWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVN 359
           VVWEGTRPLLVE+Q LVD S ++NPRRVAVG++ NRL++LLAV+H+HGGLQM+DQDVFVN
Sbjct: 299 VVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVN 358

Query: 360 VVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERLNEAFK 419
           VVGGVKVTETSADL LL+A++SSFR   LP D+VVFGEVGL+GEIRPVP+GQERL EA K
Sbjct: 359 VVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAK 418

Query: 420 HGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAA 454
           HGFK+AIVP AN+PK    GM++ GV KLS+A+ A
Sbjct: 419 HGFKRAIVPRANVPKKPPVGMEVVGVSKLSEALEA 453