Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., DNA repair protein RadA from Herbaspirillum seropedicae SmR1

 Score =  489 bits (1260), Expect = e-143
 Identities = 254/466 (54%), Positives = 327/466 (70%), Gaps = 18/466 (3%)

Query: 1   MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEV--------RLAASPQVARNERLVG 52
           M K K  Y C ECG    +W GQC ACG WN++ E         R + SPQ         
Sbjct: 1   MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSL------- 53

Query: 53  YAGALEAKVQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQ 112
              A  A V +LADI+  +VPRF +G +E DRVLGGG+VPG   LIGG+PG GKSTLLLQ
Sbjct: 54  ---AQTAPVLSLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQ 110

Query: 113 TMCLLSGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAEQEKPRIM 172
            +  +S     LYV+GEES  Q+A+RA RL +  + L++ +E  +++I     + KP + 
Sbjct: 111 ALANISRLKKVLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVA 170

Query: 173 VIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLE 232
           VIDSIQ ++   + S+PGSVAQVRE A  LTR AK + + + +VGHVTK+G LAGP+VLE
Sbjct: 171 VIDSIQTLYSDALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLE 230

Query: 233 HIIDCSILLDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEA 292
           HI+D  +  +GDT S FR +R+ KNRFGAVNELGVFAMT +G++ VSNPSA+FLS+ E  
Sbjct: 231 HIVDTVLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQ 290

Query: 293 TSGSSVMVVWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMA 352
             GS VMV  EGTRPLLVEIQALVD S + N RR++VGLEQNRL++LLAVLH+H G+   
Sbjct: 291 VPGSCVMVTQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAF 350

Query: 353 DQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQE 412
           DQDVF+N VGGVK+TE +ADLA+L+A+ SS R++PLP+ +VVFGEVGLAGEIRP P GQE
Sbjct: 351 DQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQE 410

Query: 413 RLNEAFKHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL 458
           RL EA K GF  A++P AN PK  IEG+++  V+++ DA+    E+
Sbjct: 411 RLREAAKLGFSIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREI 456