Pairwise Alignments

Query, 563 a.a., AMP-dependent synthetase from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  543 bits (1398), Expect = e-159
 Identities = 272/551 (49%), Positives = 379/551 (68%), Gaps = 7/551 (1%)

Query: 15  ALPPPNEMLLRWAKERPNEVYLKQIINRQFVEFTYAEVADKALRLVSALRALGADPGDKV 74
           A+  P EML  WA  R +E+YL+Q I  Q+++FT+ EV +K  +L  ALR LG +PGDK+
Sbjct: 4   AIKTPIEMLAHWANTRGDEIYLRQPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPGDKI 63

Query: 75  ALISKNCAEWFICDLAMMLGDYISVPIFPTAGSETIDYCLEHSESKILIVGKLDD-NKAT 133
           A++SKNCAEWFI DLA+M G YISVPI+PTA  +TI Y L+HS +K + +GKLD      
Sbjct: 64  AVLSKNCAEWFITDLALMHGGYISVPIYPTANPDTIRYVLQHSGAKAIFLGKLDHWADQE 123

Query: 134 AHVLAERPNLISISLPYPSAAKCQYEFQTLIKQHQPSEERPTHFDEKLMSIVYTSGTSGQ 193
           A V  E   L+ +++PY +    QY+++ L+    P  E P    +++M+++YTSG++GQ
Sbjct: 124 AGVGGE---LLRLAMPYDTMP-AQYQWEQLLNMGNPLIEAPLPEPDQIMTLIYTSGSTGQ 179

Query: 194 PKGAMLTYGAFTWSAQQLINHIGIEENDRLFSYLPLAHITERVYIFGSSIIGGVLTAFPE 253
           PKGA+ T+ ++ W+ Q ++  +    NDRL SYLPLAHITERV I GSS   G + AF E
Sbjct: 180 PKGAIQTFASYGWTCQAVVRDLRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSVVAFVE 239

Query: 254 SLDTFIEDVKMHRPTLFISVPRLWTLFQQRIQDKLPQKKLNILLKIPFVNSLIKRKLADG 313
           SLD+F+ DV+  +PT+F SVPRLW+LFQ+ I DK+   KLN+LLKIP ++SL+K K+  G
Sbjct: 240 SLDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIGVSKLNLLLKIPLISSLVKHKIHKG 299

Query: 314 LGLDQARVLGCGSAPVSPALLEWYRSVGLNITEAWGMTESFAYSTLNYPFRADKIGTVGN 373
           LGL+  R+LG GSAP+ P+L+ WY S+GLNI EAWGMTE+ AYS +NYPF   KIGTVG 
Sbjct: 300 LGLNHCRLLGSGSAPIPPSLIHWYHSIGLNICEAWGMTENCAYSIINYPFDVRKIGTVGK 359

Query: 374 AGPGIELKIAEDEEILVRSKGLFAGYYKNDTATAESFNDDGWLHTGDIGSLDSEGYLTIQ 433
                +++  ED E+L++S GL   YY    ATA +F+ DG+ HTGD+ ++D++G +TI 
Sbjct: 360 PVQDCQIRQGEDGELLIKSPGLMTAYYLQPEATAAAFDADGFFHTGDLCAIDADGCVTIT 419

Query: 434 GRKKDTFKTAKGKFVAPVPIEKKLFEYSRVEMMCLIGSGLPAPILLAVPHNFPHFDRARY 493
           GR KD FKTAKGK+VAPVPIE+KL +   VE++C+IGSGLP P+ L       +      
Sbjct: 420 GRVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLSEGANLQAREE 479

Query: 494 ERTTQK-VIARINSELESHEQIKGVLMIKDPWSIDNGILTPTLKIKRHVLEKKYHDVGQN 552
            R + K  +  +N  LESHE +  ++++ +PWSI+N +LTPTLKIKRHVLEK + +   +
Sbjct: 480 VRASLKATLDSVNPHLESHEHVDAIVVVNEPWSIENDVLTPTLKIKRHVLEKAFSE-RVD 538

Query: 553 WPKGQLVVWEE 563
             +G  V WE+
Sbjct: 539 GIRGAQVRWED 549