Pairwise Alignments

Query, 563 a.a., AMP-dependent synthetase from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (455), Expect = 2e-49
 Identities = 143/549 (26%), Positives = 245/549 (44%), Gaps = 62/549 (11%)

Query: 58  RLVSALRALGADPGDKVALISKNCAEWFICDLAMMLGDYISVPIFPTAGSETIDYCLEHS 117
           ++   L  LG    D+  ++S+NC +W   D+  +    I VPI+PT+  E   + +  +
Sbjct: 19  KIAQVLIQLGVQVQDRCVILSQNCPQWTCADVGTLKSRAIVVPIYPTSTVEQASFIVNDA 78

Query: 118 ESKILIVGKLDDNKATAHVLAERPNLISISLPYPSAAKCQYEFQ------TLIKQHQPSE 171
            +K++ V           +    P L  + +   +    Q + Q       L  ++  S 
Sbjct: 79  AAKVIFVDDAKQYALACELQTLCPTLEHVIVFDAAVQLAQDKPQHKHLDSLLALEYDQSA 138

Query: 172 E-----RPTHFDEKLMSIVYTSGTSGQPKGAMLTYGAFTWSAQQLINHIGIEENDRLFSY 226
           E     +  + D+ L++++YTSGT+G PKG ML Y     +  Q    +  +  D   ++
Sbjct: 139 ELEQRLKDANLDD-LLTLIYTSGTTGDPKGVMLDYRNMASTVHQHDLILPFKTGDVSLAF 197

Query: 227 LPLAHITERVYIFGSSIIGGVLTAFPESLDTFIEDVKMHRPTLFISVPRLWTLFQQRIQD 286
           LPL+H+ ER + F     GG    + ++     E +   RP     VPR        +QD
Sbjct: 198 LPLSHVFERGWSFYVLCRGG-RNVYLQNTQRVKEAISAVRPHTLCVVPRFLEKVYSAVQD 256

Query: 287 KLPQ-----KKLN-----------------------ILLKIPFVNSLIKRKLADGLGLDQ 318
           K+ +     KKL                        + L+    N L+  KL   LG  +
Sbjct: 257 KVAKSAEGRKKLFAWAMGVGERQFEVSQGRVKGGLWLSLQWRLANKLVYSKLQAVLG-GR 315

Query: 319 ARVLGCGSAPVSPALLEWYRSVGLNITEAWGMTESFAYSTLNYPFRADKIGTVGNAGPGI 378
            + + CG A +   +  ++ ++G+ +   +GMTE+ A  T N        G+ G   P I
Sbjct: 316 LKFMPCGGAALDLNVASFFHAIGIPVLCGYGMTETNATVTCN-TLDNRVAGSNGKVLPEI 374

Query: 379 ELKIAEDEEILVRSKGLFAGYYKNDTATAESFNDDGWLHTGDIGSLDSEGYLTIQGRKKD 438
           ++K+ +D+EILVR   +  GYY     TA +F +DGWL TGD G LD+ G L I  R K+
Sbjct: 375 QIKLGKDDEILVRGDTVMRGYYNRPEDTAAAF-EDGWLKTGDAGRLDAHGNLFITDRIKE 433

Query: 439 TFKTAKGKFVAPVPIEKKLFEYSRVEMMCLIGSGLPAPILLAVP-----HNFPHFDRARY 493
             KT+ GK++AP  +E  +     +E + +I         L VP       +      +Y
Sbjct: 434 LMKTSNGKYIAPQRVEGTVGRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKEKGLKY 493

Query: 494 ERTTQKV------------IARINSELESHEQIKGVLMIKDPWSIDNGILTPTLKIKRHV 541
           E   + +            +  +  EL   EQIK   ++ + +S++ G++TPTLK++R +
Sbjct: 494 ESPIELLRHSHVVEHFEQRLKHLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKM 553

Query: 542 LEKKY-HDV 549
           +  KY H++
Sbjct: 554 IYHKYVHEI 562