Pairwise Alignments

Query, 563 a.a., AMP-dependent synthetase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  204 bits (519), Expect = 8e-57
 Identities = 154/572 (26%), Positives = 260/572 (45%), Gaps = 74/572 (12%)

Query: 43  QFVEFTYAEVADKALRLVSALRALGADPGDKVALISKNCAEWFICDLAMMLGDYISVPIF 102
           Q++  T+ + +    +  +A  ALG +  + + + S+N  EWF  D        +++P +
Sbjct: 32  QWIPITWNQFSGTVRQAANAFVALGVEEQENIGIFSQNKPEWFYVDFGAFANRGVTIPFY 91

Query: 103 PTAGSETIDYCLEHSESKILIVGKLDDNKATAHVLAERPNLISISLPYPSAAKCQYEFQT 162
            T+      Y +  ++ + L VG+     +   +     +L  + +   S  K   +  +
Sbjct: 92  ATSSPAQAQYIINDAQIRYLFVGEQYQYDSAFSIFGFCSSLQQLIIFDRSVVKDPRDVSS 151

Query: 163 L-----------IKQHQPSEERPTHFD-EKLMSIVYTSGTSGQPKGAMLTYGAFTWSAQQ 210
           +           +  ++  EER      + L +I+YTSGT+G+PKG ML +  +    +Q
Sbjct: 152 IYFDEFMAMGEGLPHNEVVEERTARASYDDLANILYTSGTTGEPKGVMLHHSCYL---EQ 208

Query: 211 LINH----IGIEENDRLFSYLPLAHITERVYIFGSSIIGGV---LTAFPESLDTFIEDVK 263
              H      + + D   ++LPL H+ E+ + +   I  GV   +   P  + T I+++ 
Sbjct: 209 FHTHDERLTTMTDKDVSMNFLPLTHVFEKAWCY-LCIHKGVQICINLRPADIQTTIKEI- 266

Query: 264 MHRPTLFISVPRLWTLFQQRIQDKLPQ----KKLNIL----------------------- 296
             RPTL  SVPR W      +Q+K+ +    KK  +L                       
Sbjct: 267 --RPTLMCSVPRFWEKVYAGVQEKINETTGLKKALMLDAIKVGRIHNLDYLRLGKTPPVM 324

Query: 297 --LKIPFVNSLIKRKLADGLGLDQARVLGCGSAPVSPALLEWYRSVGLNITEAWGMTESF 354
             LK  F    I   L   +G++         A V   + E+  SVG+N+   +G+TES 
Sbjct: 325 NQLKYKFYEKTIYSLLKKTIGIENGNFFPTAGAAVPDEINEFVHSVGINMVVGYGLTEST 384

Query: 355 AYSTLNYPFRADKIGTVGNAGPGIELKIAEDEEILVRSKGLFAGYYKNDTATAESFNDDG 414
           A  +   P   D IG+VG   PG+E+KI ED EIL+R K +  GYYK   ATA + + DG
Sbjct: 385 ATVSCTLPVGYD-IGSVGVVLPGLEVKIGEDNEILLRGKSITKGYYKKAEATAAAIDADG 443

Query: 415 WLHTGDIGSLDSEGYLTIQGRKKDTFKTAKGKFVAPVPIEKKLFEYSRVEMMCLIGSGLP 474
           W HTGD G     G L +  R KD FKT+ GK++AP  +E KL     ++ + +I     
Sbjct: 444 WFHTGDAGYF-KNGQLFLTERIKDLFKTSNGKYIAPQALETKLVIDRYIDQIAIIADQRK 502

Query: 475 APILLAVP-----HNFPHFDRARYERTTQ-----KVIARINSELES-------HEQIKGV 517
               L VP      ++       Y+   +     K++    + +E+       +EQIK  
Sbjct: 503 FVSALIVPVYGFVKDYAKEKGIEYKDMAELLQHPKIVGLFRARIETLQQQFAHYEQIKRF 562

Query: 518 LMIKDPWSIDNGILTPTLKIKRHVLEKKYHDV 549
            ++ +P+S++ G LT TLK+KR V+ + Y ++
Sbjct: 563 TLLPEPFSMERGELTNTLKLKRSVVSENYKEL 594