Pairwise Alignments

Query, 563 a.a., AMP-dependent synthetase from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  184 bits (468), Expect = 7e-51
 Identities = 144/549 (26%), Positives = 247/549 (44%), Gaps = 62/549 (11%)

Query: 58  RLVSALRALGADPGDKVALISKNCAEWFICDLAMMLGDYISVPIFPTAGSETIDYCLEHS 117
           ++   L  LG    D+  ++S+NC +W   D+  +    + VPI+PT+  E   + +  +
Sbjct: 48  KIAQVLIELGVQVQDRCVILSQNCPQWTCADIGTLKSRAVVVPIYPTSTLEQASFIINDA 107

Query: 118 ESKILIVGKLDDNKATAHVLAERPNLISISLPYPSAAKCQYEFQ------TLIKQHQPSE 171
            +K++ V           +  + P L  + +   S    Q + Q       L K++  S 
Sbjct: 108 AAKVIFVDDAKQYALACELQKQCPTLEHVIVFDASVELAQDKAQHQHLDSLLAKEYGQSA 167

Query: 172 E-----RPTHFDEKLMSIVYTSGTSGQPKGAMLTYGAFTWSAQQLINHIGIEENDRLFSY 226
           E     +  + D+ L++++YTSGT+G PKG ML Y     + +Q    +     D   ++
Sbjct: 168 ELEQRLKDANLDD-LLTLIYTSGTTGDPKGVMLDYRNMASTVRQHDQILPFTTGDVSLAF 226

Query: 227 LPLAHITERVYIFGSSIIGGVLTAFPESLDTFIEDVKMHRPTLFISVPRLWTLFQQRIQD 286
           LPL+H+ ER + F     GG    + ++     E +   RP     VPR        +QD
Sbjct: 227 LPLSHVFERGWSFYVLCRGGH-NVYLQNTQRVKEAISAVRPHTLCVVPRFLEKVYSAVQD 285

Query: 287 KLPQ-----KKLN-----------------------ILLKIPFVNSLIKRKLADGLGLDQ 318
           K+ +     KKL                        + L+    + L+  KL   LG  +
Sbjct: 286 KVAKSAEGRKKLFAWAMGVGERQFEVSQGRAKGGLWLSLQWRLAHKLVYSKLQAVLG-GR 344

Query: 319 ARVLGCGSAPVSPALLEWYRSVGLNITEAWGMTESFAYSTLNYPFRADKIGTVGNAGPGI 378
            + + CG A +   +  ++ ++G+ +   +GMTE+ A  T N        G+ G   P I
Sbjct: 345 LKFMPCGGAALDLNVASFFHAIGIPVLCGYGMTETNATVTCN-TLDNRVAGSNGKVLPEI 403

Query: 379 ELKIAEDEEILVRSKGLFAGYYKNDTATAESFNDDGWLHTGDIGSLDSEGYLTIQGRKKD 438
           E+K+ +D+EILVR   +  GYY     TA +F +DGWL TGD G LD+ G L I  R K+
Sbjct: 404 EVKLGKDDEILVRGDTVMRGYYNRPEDTAAAF-EDGWLKTGDAGRLDANGNLFITDRIKE 462

Query: 439 TFKTAKGKFVAPVPIEKKLFEYSRVEMMCLIGSGLPAPILLAVP-----HNFPHFDRARY 493
             KT+ GK++AP  +E  +     +E + +I         L VP       +      +Y
Sbjct: 463 LMKTSNGKYIAPQRVEGTVGRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKDKGLKY 522

Query: 494 ERTTQKV------------IARINSELESHEQIKGVLMIKDPWSIDNGILTPTLKIKRHV 541
           E   + +            +  +  EL   EQIK   ++ + +S++ G++TPTLK++R +
Sbjct: 523 ESPIELLRHSHVVEHFEQRLKHLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKM 582

Query: 542 LEKKY-HDV 549
           +  KY H++
Sbjct: 583 IYHKYAHEI 591