Pairwise Alignments

Query, 384 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 4e-26
 Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 20/248 (8%)

Query: 137 SHYFSASVVERLETYLSLIQQSI-CGEYALIHQLVDHVHQIETQSPEHWLHIKQHKERIS 195
           +H   AS   +LE+ + L  Q +    Y +IH+L       E +  E  LHI     R+S
Sbjct: 123 THLTLASRANQLESLVQLRTQELESARYKIIHKLG---RAAEFRDNETGLHII----RMS 175

Query: 196 RYARIIALDVADQYALDDELIENISQFATCHDLGKLALPADLLQKRASLANHEKEQVHNH 255
           +Y  ++A  + DQ A   +L  +    A  HD+GK+ +P  +L K   L   E   +  H
Sbjct: 176 QYGYLLARKI-DQPAHWCQLFLSA---APMHDIGKIGIPDAVLLKPGKLTAEEYIIIQTH 231

Query: 256 IEYGIDLLNEVIAKLGTPHHPCLAVLREIMAYHHEFLDGSGYPFGLVSDQIPIPARIIAV 315
              G  ++       G    P L + +EI  YHHE  DG+GYP GL  DQIP+ ARI  +
Sbjct: 232 PAIGAKII-------GDDDDPLLVMAKEIALYHHERWDGTGYPNGLSQDQIPLCARIATI 284

Query: 316 ANIFDALTAHRPYKQAQSIPHALLELEKMVSDGKLDRHCVNALRENQEELKEIVARFPEQ 375
           A++FDALT  R YK A SI  A   L +  +  + D   V A  E + E+ +I  +F E 
Sbjct: 285 ADVFDALTTPRTYKTAWSIDDAFNYL-RDGAGSQFDPLLVTAFLECKAEIIDICTQFAEP 343

Query: 376 DPKDQGIT 383
             +   +T
Sbjct: 344 TSRLAAVT 351