Pairwise Alignments

Query, 384 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 964 a.a., HAMP domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 177 ETQSPEHWLHIKQHKERISRYARIIALDVADQYALDDELIENISQFATCHDLGKLALPAD 236
           E + P+H L     K      A ++  D   Q   +D    ++ +    +D G+L    +
Sbjct: 760 ERKEPDHPLPPVMEKLLCDSSAFVVKPDAVSQET-EDRWGFDMPRPEVLYDRGELH---N 815

Query: 237 LLQKRASLANHEKEQVHNHIEYGIDLLNEVIAKLGTPHHPCLAVLREIMAYHHEFLDGSG 296
           L     +L + E+ +++ HI   I +L+E    L  P H  L  + EI   HHE +DG+G
Sbjct: 816 LSIPWGTLTSEERYKINEHIIQTIMMLSE----LPFPAH--LENVPEIAGGHHERMDGTG 869

Query: 297 YPFGLVSDQIPIPARIIAVANIFDALTA-HRPYKQAQSIPHALLELEKMVSDGKLDR 352
           YP  +  + +   ARI+AVA+IF+ALTA  RPYK+A+++  A+  +  M   G +DR
Sbjct: 870 YPRRIKGELLHPLARIMAVADIFEALTAPDRPYKKAKTLSQAMNIMVGMAKSGHIDR 926



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 190 HKERISRYARIIALDVAD-------QYALDDELIENISQFATCHDLGKLALPADLLQKRA 242
           H  R+   +R++A   +D        + + +E  E +   +  HD GK+  P  ++ K  
Sbjct: 601 HCTRVPILSRLLAEAASDTRQGAYASFGMTNESWEELYLASWLHDCGKVTTPEFVVDKAT 660

Query: 243 SLANHEKEQVHNHI 256
            L     E +HN I
Sbjct: 661 KL-----ETIHNRI 669