Pairwise Alignments

Query, 1024 a.a., beta-galactosidase from Vibrio cholerae E7946 ATCC 55056

Subject, 1076 a.a., Beta-galactosidase (RefSeq) from Shewanella loihica PV-4

 Score =  603 bits (1554), Expect = e-176
 Identities = 385/1072 (35%), Positives = 546/1072 (50%), Gaps = 96/1072 (8%)

Query: 5    SDILLSQD-WQNPHIVKWHCRTPHVPLHSYRTEQEARLDVGGNRQ---SLNGQWRFALFE 60
            S+  L++D WQ+  + + +   PH     Y +E  A LD     Q    LNG+WRF L +
Sbjct: 26   SNPALARDRWQDHTLFEVNKLAPHASFFGYESEPLALLDEMDRSQLYLDLNGRWRFHLAK 85

Query: 61   KPEAVEPAVIDPDFDDSAWAHIPVPSNWQMQGFDKPIYTNIQYPFADRPPYVPQD-NPTG 119
             P+A       P+FD S W  I VP N++ QG+   IY + +YPF  + P  P D NPTG
Sbjct: 86   NPDATPKEFAAPEFDASHWGSIQVPGNFETQGYGHAIYLDERYPFDTKWPDAPSDHNPTG 145

Query: 120  CYRHRFTLEKQALTESIRIVFDGVNSAFHLWCNGHWVGYSQDSRLPAEFELTPYLQEGEN 179
             YR  FTL      + + I      SA  L+ NG  VGYSQ ++ PAEF++TPYLQ G+N
Sbjct: 146  LYRKTFTLPAHWQQKQVFIHIGAARSALTLFVNGREVGYSQGAKTPAEFDITPYLQAGDN 205

Query: 180  LLVAMVLRWSDGSYLEDQDMWWLSGIFRDVYLYRKPILAIEDFFIRTELDALYQHAELRV 239
            L+   ++RWSD SYLE QDM  ++GI R+VYLY  P   IED  + T L+     A+L +
Sbjct: 206  LVAMQLIRWSDASYLESQDMLRMTGIEREVYLYATPKQRIEDIQVVTHLNEDLTRAKLAI 265

Query: 240  ETRLSQV---TRHHQVQVALFDAQGECVARSQALHTGQRVVDEKGAWHDKTEHSLAICSP 296
               ++      R  +++  L D QG+ VA++      QR+  +  A   K   S  + SP
Sbjct: 266  RVDIASHQPGVRALELEARLLDPQGKPVAKAN-----QRLSLKGDA---KPVFSQTLISP 317

Query: 297  TLWSDEAPYLYRCVICLLDEDGAPIEFESAAVGFRKVEITQGLLKLNGQPLLIRGVNRHE 356
             LW+ E P LYR ++ L  E G  ++  S  +G RK+ I  G LK+N + + IRGV+RHE
Sbjct: 318  KLWNAEMPNLYRLILTLKTEKGETLQVASQQIGVRKIAIENGQLKVNNKAITIRGVDRHE 377

Query: 357  HHPELGHVMDEASMRRDIELMKQHNFNAVRTAHYPNHPRWYELCDEYGLYVVDEANLETH 416
              P+ GHV+   +M  DI LMKQ+N NAVR++HYPNHP W  L D YGLYV+DEAN+E+H
Sbjct: 378  TDPQTGHVVSRETMELDIRLMKQNNINAVRSSHYPNHPYWLSLADRYGLYVIDEANIESH 437

Query: 417  --GQFPMSRLSNDPQWVNAYLQRMIGMVERDKNHPCVIIWSLGNESGIGTNHHAMYQWTK 474
                   ++L N+  W+ A+  R+  MVERDKNHP VIIWSLGNE+G G     +YQW K
Sbjct: 438  PLAIDDKTQLGNEMSWLPAHQARIERMVERDKNHPSVIIWSLGNEAGEGKLFERLYQWIK 497

Query: 475  QRDPSRPVQYEGGGANTAATDIVCPMYARVDQHQPHPAVPKYALKNWISLPQENRPLILC 534
            +RDP+RPVQYE  G     TDIV PMY  +++      + +YA +        +RPLI+ 
Sbjct: 498  RRDPNRPVQYEPAG-EAPYTDIVAPMYPSIER------IREYAER------ASDRPLIMI 544

Query: 535  EYAHAMGNSLGAFYKYWQAFREFPRLQGGFIWDWVDQGISKWDSEGRHYWGYGGDF-GDT 593
            EYAHAMGNS+G    YW     +P+LQGGFIWDWVDQ ++  +  G+ YW YG D+  D 
Sbjct: 545  EYAHAMGNSVGNLQDYWDVIEAYPQLQGGFIWDWVDQALAFSNDLGQRYWAYGKDYHPDM 604

Query: 594  INDRQFCINGLLFPDRTPHPALHEVKKVQQPYQ---FSLSYPKLTIH--NERLFAALP-L 647
              D  F  NGL+ PDR PHP L EVKKV QP +   F +   K +++  N   FA+   L
Sbjct: 605  PTDGNFLNNGLVDPDRNPHPHLSEVKKVYQPIKLRDFKVEGDKASVNLINGFDFASTSGL 664

Query: 648  ELVVSVLCDGQEIKQERLPLDIAPRGTITLDLASLP----MLPEHEYHLNAVLLCREDQP 703
             L  ++  DG+ I  +R  + I   G       +LP    +    EYHL   +L    +P
Sbjct: 665  SLNWTLQKDGKIIASKRQAMPILSPGEQARVSLTLPGKQSLSAPFEYHLLLEVLVDTPRP 724

Query: 704  WSNAGHCIASEQWCLQPRRSMLPKITHAPLPQWQQDGDKVRIEAANQQWQFNRQTGLLEQ 763
               +   IA EQ+ L    +           +  +D    R+ +    ++F++++G L Q
Sbjct: 725  LLPSDLRIAFEQFALPRFGTKAAYQVKKNQAKISEDSGSYRLTSGELSYEFDKRSGWLTQ 784

Query: 764  WWQNGQPVLSEPLRDNFYRAVLDNDIGTSEAQHLDPNSWIARWHAAGLDKLRVECDDLRV 823
             +Q G+P L  PL  NF+RA  DND+G           W   W  A          +L V
Sbjct: 785  IYQEGEPQLKAPLMANFWRAPTDNDLGNQMP------DWAGAWQDA--------ATELEV 830

Query: 824  TTLNESVEVVIDVAHYH-QQALALRTRWRYQIFGDARVELNVEVMLCSDLPPLPRVGLTL 882
            T ++  + + + ++  H ++  +LRTR+     G   V+    +     L  LPR G + 
Sbjct: 831  TAIDADLALGLTISQTHAEKGFSLRTRYSLDNAGRLMVDSQF-IPGNKPLADLPRFGFST 889

Query: 883  ALPVAENPVSWFGRGPHENYPDRLQSAHVGRYTATVDELHTPYIFPSENGLRCDTRQLQV 942
             L      +S+FGRGP E Y DR     +G Y   +++ +  Y  P E G R   R   V
Sbjct: 890  RLGFEHRYLSYFGRGPEETYADRQSGNPLGWYALPIEQTYHRYPRPQETGQRTQVRYAAV 949

Query: 943  ------GALVVEGHFH----------------FSLSRYSQTMLD---------------- 964
                  G L +    H                 SL  ++Q  +D                
Sbjct: 950  TDQRGQGWLAIANQAHAGEQDRKEADEVATLQTSLWPFAQADIDFRRGDAQDSASGLVAV 1009

Query: 965  KAKHSNELVAGDKWYLNLDAQHMGVGGDDSWSQSVHPEFLLTQPHYQYQLTL 1016
               H  E+   +    N+D + MGVGGD SW + VH  + +     ++  TL
Sbjct: 1010 TRNHGAEIPLREFVTWNIDYRQMGVGGDTSWGRPVHGPYRIKAEPIRFGFTL 1061