Pairwise Alignments

Query, 1024 a.a., beta-galactosidase from Vibrio cholerae E7946 ATCC 55056

Subject, 1342 a.a., beta-galactosidase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  443 bits (1139), Expect = e-128
 Identities = 336/1084 (30%), Positives = 508/1084 (46%), Gaps = 131/1084 (12%)

Query: 11   QDWQNPHIVKWHCRTPHVPLHSYRTEQEARLDVGGNR---QSLNGQWRFALFEKPEAVEP 67
            ++W++P  +  +   PH     ++    AR  +  N    QSL+G W+F     P++   
Sbjct: 38   KEWESPENLALNKEQPHAYFFPFQHLDNARKVLPENSKYWQSLDGDWKFHWAPDPDSRPK 97

Query: 68   AVIDPDFDDSAWAHIPVPSNWQMQGFDK--------PIYTN------------------I 101
                 ++D S+W  IPVPS+W + G  K        PIY N                  +
Sbjct: 98   DFYQTEYDVSSWDAIPVPSSWNIYGIQKDGSQKYGTPIYVNQPVIFQHSVKVDDWRGGVM 157

Query: 102  QYPFADRPPYVPQDNPTGCYRHRFTLEKQALTESIRIVFDGVNSAFHLWCNGHWVGYSQD 161
            + P A+   Y  + N  G +R  F + +      + I FDGV+S F+LW NG +VG+S++
Sbjct: 158  RTPPANWTTYKDR-NEVGSFRRDFEIPQDWDGREVFISFDGVDSFFYLWINGQYVGFSKN 216

Query: 162  SRLPAEFELTPYLQEGENLLVAMVLRWSDGSYLEDQDMWWLSGIFRDVYLYRKPILAIED 221
            SR  A F +TPYLQ+G+N + A V R SDGS+LE QDM+ L GIFR V LY  P +   D
Sbjct: 217  SRNTANFNITPYLQKGKNTVAAEVYRSSDGSFLEAQDMFRLPGIFRTVALYSVPKVHFRD 276

Query: 222  FFIRTELDALYQHAELRVETRL----SQVTRHHQVQVALFDAQGECVARSQALHTG--QR 275
                 +LDA Y    L V   +     +  + ++V  +L+    +  +    L  G    
Sbjct: 277  LVATPDLDATYTDGSLTVNAEIRNLDKKAIKDYKVYYSLY--ANKLYSDENTLVDGFLSP 334

Query: 276  VVDEKGAWH-DKTEHSLAICSPTLWSDEAPYLYRCVICLLDEDGAPIEFESAAVGFRKVE 334
            V+D+         +  L + +P  WS E PY Y  V  L D+    +E  S  VGFRKVE
Sbjct: 335  VIDKIAPNETGSVQTVLKVKAPNKWSAEFPYRYTLVAELKDKKNRTVEMVSTIVGFRKVE 394

Query: 335  ITQ--------GL----LKLNGQPLLIRGVNRHEHHPELGHVMDEASMRRDIELMKQHNF 382
            I          GL      +NG+ + ++GVNRHE +P +GH +    M ++I LMK+ N 
Sbjct: 395  IKDTPASEDEFGLAGRYYYVNGKTVKLKGVNRHESNPGVGHAITREMMEKEIMLMKRANI 454

Query: 383  NAVRTAHYPNHPRWYELCDEYGLYVVDEANLETHG-QFPMSRLSNDPQWVNAYLQRMIGM 441
            N VR +HYP+ P WY LC++YG+Y+ DEAN+E+H   +  + LS+  +W NA++ R++ M
Sbjct: 455  NHVRNSHYPDDPYWYFLCNKYGIYLEDEANIESHEYYYGAASLSHPVEWKNAHVARVMEM 514

Query: 442  VERDKNHPCVIIWSLGNESGIGTNHHAMYQWTKQRDPSRPVQYEGGGANTAATDIVCPMY 501
            V  + N+P ++IWSLGNE+G G N  A Y   K+ D SRPVQYE    N    D+    Y
Sbjct: 515  VRANVNNPSIVIWSLGNEAGPGKNFVAAYDALKKFDTSRPVQYE---RNNDIVDMGSNQY 571

Query: 502  ARVDQHQPHPAVPKYALKNWISLPQENRPLILCEYAHAMGNSLGAFYKYWQAFREFPRLQ 561
              +   +      KY +K          P  + EYAH+MGN+ G    YW+A        
Sbjct: 572  PSIGWVR-GAVQGKYDIK---------YPFHISEYAHSMGNACGNLIDYWEAMESTNFFC 621

Query: 562  GGFIWDWVDQGISKWDSE-GRHYWGYGGDFGDTINDRQFCINGLLFPDRTPHPALHEVKK 620
            GG IWDWVDQ +  +D + G  Y  YGGDFGDT ND QF +NG++F D  P P  +EVKK
Sbjct: 622  GGAIWDWVDQSMYNYDPKTGVRYLAYGGDFGDTPNDGQFVMNGIVFGDLEPKPQYYEVKK 681

Query: 621  VQQPY---QFSLSYPKLTIHNERLFAAL--PLELVVSVLCDGQEIKQER-LPLDIAP--R 672
            V Q               I N+  F  L    +LV S+  DG+ I   + + ++IAP  R
Sbjct: 682  VYQHIGVKAIDTEKGVFEIFNKYYFKNLAEDYQLVYSLYEDGKPIMTGKPMDINIAPRQR 741

Query: 673  GTITLDLASLPMLPEHEYHLNAVLLCREDQPWSNAGHCIASEQWCLQPR--RSMLPKIT- 729
              ITL      +  + EY +    + ++ +PW+  G  +A EQ  ++    R  + ++T 
Sbjct: 742  AQITLPYDHASLKKDAEYFMKLQFILKDQRPWAAKGFPMAEEQILIKEATDRPSISEVTA 801

Query: 730  -HAPLPQWQQDGD--KVRIEAANQQWQFNRQTGLLEQWWQNGQPVLSE---PLRDNFYRA 783
              A L  +  D D  ++ I+ A+ +  F+ QTG +       + V+++   P  D   RA
Sbjct: 802  GAAKLDGFVLDKDTKRILIKGADFEAIFDPQTGSIYSLKYGNETVIADGNGPKLDAL-RA 860

Query: 784  VLDNDIGTSEAQHLDPNSWIARWHAAGLDKLRVECDDLRV-------------------- 823
              +ND           N + A W   GL  L  +  + +V                    
Sbjct: 861  FTNND-----------NWFYAPWFEHGLHNLIHKATEYKVLNKGNGTLVLSFTVESQAPN 909

Query: 824  --------TTLNESVEVVIDVAHYHQQALALRTRWRYQIFGDARVELNVEVMLCSDLPPL 875
                    ++   S+E + D   +        T   + ++ D  +EL   +        L
Sbjct: 910  AARIKGGTSSGKNSIEELTD-RKFGSNDFKFVTNQIWTVYPDGSIELQSSITSNRSSLVL 968

Query: 876  PRVGLTLALPVAENPVSWFGRGPHENYPDRLQSAHVGRYTATVDELHTPYIFPSENGLRC 935
            PR+G  + +P   +  +++GRGP +NY DR     + +YT +V      +  P + G   
Sbjct: 969  PRLGYVMKVPQQYSNFTYYGRGPIDNYADRKSGQFIEQYTNSVAGEFVNFPKPQDMGNHE 1028

Query: 936  D------TRQLQVGAL-VVEGHFHFSLSRYSQTMLDKAKHSNELVAGDKWYLNLDAQHMG 988
            D      T Q   GA+ V       S  +YS   L  A H  +L      YL+LD    G
Sbjct: 1029 DVRWCALTNQAGNGAVFVATDRLSASALQYSALDLILASHPYQLPKAGDTYLHLDCAVTG 1088

Query: 989  VGGD 992
            +GG+
Sbjct: 1089 LGGN 1092