Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator GalS from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N2E2

 Score =  187 bits (476), Expect = 2e-52
 Identities = 121/331 (36%), Positives = 183/331 (55%), Gaps = 3/331 (0%)

Query: 1   MATIKDVAREAGVSVATVSRVINKSPKASQASIDTVTSAMHKLGYRPNAAARALVNQSTN 60
           MATIKDVA  AG+S  TVS V+NK+   S+     V +A+ +L Y P+A AR+L  ++T 
Sbjct: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRLKVEAAIERLDYVPSAVARSLKAKTTA 60

Query: 61  TIGVLVSDVSDPFFGTLVKAVDTVAHREGKHLLIGNGYHRAEEERRALELLINSRCDALV 120
           TIG+LV +  +P+F  L + ++    R G  +++ N     +++R  L +L+  R D L+
Sbjct: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120

Query: 121 IHSKALPNEELIEYANEVKT-LVLINRHIPQLADRCISLDNQKGAYLATDFLIRQGHRNI 179
             S A  +  L E  + V+T +V+++R +  +    + +D++ GAYLAT  L+  GHR+I
Sbjct: 121 FAS-AGGDVGLAEGLSNVRTPMVIVDRGLEGVDADLVRIDHEYGAYLATRHLLELGHRDI 179

Query: 180 ACISSSHQIEDADQRIAGYQQALNEHGITLSSSYIEKASPDSEGGEQAMTNLLVKSLPFT 239
           A I        A  R+AGY +AL E GI L    + ++   S GG +A   LLV+  P +
Sbjct: 180 AFIGGPANTSVAQMRLAGYCRALKEAGIELPVERMLESDFTSTGGYRAAAQLLVQQPP-S 238

Query: 240 AVVAYNDNMAAGALLVLEENGHSVPEHVSVIGFDDALISRYLRPRLTTVRYPIQLMAEKA 299
           A+ A ND +  G L    E    VP  +SVIGFDD  +SRY+ P LTTV   I  + E A
Sbjct: 239 AIFAANDMIGIGVLRAAAERNVRVPSELSVIGFDDIQMSRYVYPALTTVGQSILQLGEMA 298

Query: 300 TQLALALATDAPRENDPMIFSPTIVRRDSVA 330
            ++ L          +  I +P+IV R+S A
Sbjct: 299 AEVLLRRIATPGLATEQRIVTPSIVLRESTA 329