Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator GalS from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  239 bits (609), Expect = 9e-68
 Identities = 134/329 (40%), Positives = 192/329 (58%)

Query: 1   MATIKDVAREAGVSVATVSRVINKSPKASQASIDTVTSAMHKLGYRPNAAARALVNQSTN 60
           MATI DV+  AGVS+ATVSRV+N + K S  +   V  AM KL YRPN  A++L +  +N
Sbjct: 1   MATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSN 60

Query: 61  TIGVLVSDVSDPFFGTLVKAVDTVAHREGKHLLIGNGYHRAEEERRALELLINSRCDALV 120
           +IGVLVS +  PF+G +++ V++      KH++I  G+  A +E+  +E L++  CDAL+
Sbjct: 61  SIGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALI 120

Query: 121 IHSKALPNEELIEYANEVKTLVLINRHIPQLADRCISLDNQKGAYLATDFLIRQGHRNIA 180
           + ++ L N  L+E       +VLINRH+  + +RC+ L+N +G  LA+  ++ +GH+ IA
Sbjct: 121 VDAEILSNGYLVELCQGKTPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQIA 180

Query: 181 CISSSHQIEDADQRIAGYQQALNEHGITLSSSYIEKASPDSEGGEQAMTNLLVKSLPFTA 240
            IS      DA +R+ G++QAL E GI    +   +     EGG +AM  LL +   FTA
Sbjct: 181 YISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFTA 240

Query: 241 VVAYNDNMAAGALLVLEENGHSVPEHVSVIGFDDALISRYLRPRLTTVRYPIQLMAEKAT 300
           VV  ND MA+GA+    E G  VPE +S +GFD+    RY+ P+LTTV  PIQ M   A 
Sbjct: 241 VVCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMAA 300

Query: 301 QLALALATDAPRENDPMIFSPTIVRRDSV 329
              L    D         F P +V RDSV
Sbjct: 301 HWVLREVYDQTDVTFCHRFEPELVVRDSV 329