Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator GalS from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., transcriptional regulator, LacI family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (391), Expect = 2e-42
 Identities = 112/339 (33%), Positives = 175/339 (51%), Gaps = 13/339 (3%)

Query: 3   TIKDVAREAGVSVATVSRVINKSPKASQASIDTVTSAMHKLGYRPNAAARALVNQSTNTI 62
           TI DVA+ AGVS+ TVSRV N  P   QA++D V  A+  L Y+PN AAR L    +  I
Sbjct: 4   TINDVAKYAGVSIKTVSRVTNNEPSVKQATVDKVNEAIKVLNYQPNLAARNLAGTKSYAI 63

Query: 63  GVLVSDVSDPFFGTLVKAVDTVAHREGKHLLIGNGYHRAEEERRALELLIN-SRCDALVI 121
           G +  + +  +   +   + +    +G  L+I     +++     L  L+  SR   LV+
Sbjct: 64  GFIYDNPNAYYIIDMQNGILSACKDKGYELVIHPCNAKSDTICDELTQLVKYSRLAGLVL 123

Query: 122 HSKALPNEELIEYANEVKT---LVLINRHIPQLADRCISLDNQKGAYLATDFLIRQGHRN 178
                 + ++++  NE+      ++    I +     I ++++ GA   T  LI  GH+N
Sbjct: 124 TPPLSEDPKVLKSLNEIDANYVRIIAGEGIIEPDGLTILVNDKSGAVEITQHLIDLGHKN 183

Query: 179 IACISSSHQIEDADQRIAGYQQALNEHGITLSSSYIEKASPDSEGG-EQAMTNLLVKSLP 237
           IA +S     E   +R+ GY+QAL ++ + L+ +YI +     E G E A T + +K+ P
Sbjct: 184 IAFLSGDLHHESTKERLLGYKQALTKNHLILNENYIIEGKYSFESGVEGANTLIKLKNRP 243

Query: 238 FTAVVAYNDNMAAGALLVLEENGHSVPEHVSVIGFDDALISRYLRPRLTTVRYPIQLMAE 297
            TA+VA ND +AAGAL      G  +P  +S++GF+D+  SR   P+LTTV  P   +A+
Sbjct: 244 -TAIVACNDEIAAGALFAARLAGLDIPGDLSIVGFEDSPFSRQTWPKLTTVHQPNSEIAQ 302

Query: 298 KATQLALALATDAPRENDPMI---FSPTIVRRDSVAQKR 333
            AT+L +A      RE D      F+P  V RDS A  +
Sbjct: 303 VATELLIA----KRREQDAKFTKTFTPEPVIRDSSASPK 337