Pairwise Alignments

Query, 304 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.8 bits (229), Expect = 8e-24
 Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 5   ISLKQLRVFTTITQHKSLTVAAEVLCLSKAAVSVALSELEKQLGHALFDRVNNR----LV 60
           + ++QL+    +    S T AA+ L +++ A+S ++  LE  LG  L +R +N+    L 
Sbjct: 1   MDIRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLA 60

Query: 61  LNQEGQKLLPMADELLQRAKDID-RLFAEQQVLTGKLRIGSSDTIGNQVAPYLISAFRQL 119
           L  EG  L   A  +L++ K  + ++ A   + +G++RI     +G+   P  + AFR  
Sbjct: 61  LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQ 120

Query: 120 HPHPSQSLFISNSAQVCQKLVDYELDIGLIEGKTLHPELISTQFSQDEMCIICAPDHPLA 179
           +P    SLF   +    + L   E+DI +I  + L P+  S    +++M I    +HPLA
Sbjct: 121 YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIAMGAEHPLA 180

Query: 180 QQERLVMSDFEHSDWVLREAGSGSREFFLRVIAPRIEHWIEAFELNTTEALINSVSSGLG 239
           +   + ++DF   + V+ + G   RE+ L       +    AFE N    +   VS G G
Sbjct: 181 ELPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQGFG 240

Query: 240 LGCLSRLAAKTPQQDGRVVILNIPLDMKRRFWMLVHKEKYQNPLL---RQFIEF 290
           +  +  +A  +P+ D    IL  P D    F  L    K Q P+    R F+EF
Sbjct: 241 ITSVLEMAI-SPKDD----ILAKPFD-PPVFLNLHIAWKKQRPVSQADRAFVEF 288