Pairwise Alignments

Query, 322 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  370 bits (951), Expect = e-107
 Identities = 191/314 (60%), Positives = 236/314 (75%), Gaps = 6/314 (1%)

Query: 7   AKVMGAPTPMAGLALGIASLGWSWENMIAA-HGVAQWVGAAIASVLLIVLAFKFLWHGHL 65
           A+    P+PM GLAL IASLGW+WE+++ + +G  Q  GA IAS LL++L  KFL H  +
Sbjct: 10  AQAAKLPSPMGGLALAIASLGWTWESVMPSLNGWGQLTGAMIASALLLMLTGKFLLHPTV 69

Query: 66  LRQDLAHPVVGSVVPTFAMATMVVSASLGHFYPVAGDALWLFAVGLHILFLVSFLYHRAQ 125
           L+ +L+HPV+GSV+PTFAMA MVVS  LGH++P AG ALWL A+ +H++FL +F+Y+RA 
Sbjct: 70  LKNELSHPVIGSVIPTFAMALMVVSNLLGHYFPHAGLALWLGAIAIHVVFLGAFIYYRAI 129

Query: 126 AFELHHMVPSWFVPPVGIIVADVSF--SGHPALAPIAYACLVFGMLAYAVMLPMMIYRFI 183
            F+L HMVPSWFVPP+GIIVA VSF  +G P L       L FGMLAY +MLP+M+YR I
Sbjct: 130 DFKLEHMVPSWFVPPIGIIVAAVSFPSNGEPWLVN---TILAFGMLAYLIMLPLMLYRLI 186

Query: 184 FTHEIPDAAKPTLAIMAAPASLSLAGYLTVVSEPSPVIVALLFGIAVLMTAIIYLAFTRL 243
           F   IPDAAKPT+AI+AAPASLSLAGYLTV  +PS  +VA+L  IA+LMT++IYLAF  L
Sbjct: 187 FCQAIPDAAKPTIAILAAPASLSLAGYLTVCEQPSIAVVAILVSIAILMTSVIYLAFFHL 246

Query: 244 LRLPFSPGYAAFTFPMVIGATALFKMAHWMENIGVAEHYVAQVHWLASLELIVATVVVSY 303
           L+LPFSPGYAAFTFPMVIGATALFK AHW+E           V  LA  EL VAT+VV+Y
Sbjct: 247 LKLPFSPGYAAFTFPMVIGATALFKTAHWLEQFSQMAELTEWVRLLADFELGVATIVVAY 306

Query: 304 VAIRYLAFYQPHKV 317
           VA+RYL  Y P+ V
Sbjct: 307 VALRYLTHYVPNPV 320