Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1150 a.a., Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) from Pseudomonas fluorescens FW300-N2E2

 Score =  632 bits (1630), Expect = 0.0
 Identities = 428/1195 (35%), Positives = 625/1195 (52%), Gaps = 139/1195 (11%)

Query: 2    FTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASE-------- 53
            F V H N+++ L+ L++ L++  PL  P   E  LVQS G++QWLK+ALA +        
Sbjct: 11   FMVVHGNRLDELRSLVISLMRRYPLA-PLENEIALVQSNGIAQWLKLALAEDPEDDDSGG 69

Query: 54   LGVAANLEFPLPATFIWQMFTQVL--PDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPL 111
             G+AA ++  LP +F+WQ++  VL   ++P +S  +K  ++WRLM LLP+L+++  F+PL
Sbjct: 70   CGIAAAIDVQLPGSFMWQLYRTVLGRDEIPAKSLLDKAPLTWRLMRLLPQLIEQPHFEPL 129

Query: 112  QRYLQDDEDDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGE--------DVVEIADQHP 163
            +R+L  D D  KR+QL+E++AD+FD Y VYR DW+  W  G         ++  +A  + 
Sbjct: 130  RRFLTHDTDLRKRYQLSERLADLFDQYQVYRADWLEDWAEGRHQTRNVRGEIKSLAPANC 189

Query: 164  WQPILWRELYAYTHKQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRY 223
            WQ  LWR L     +QG +   RA ++QR+IE++ S +      P R+ +FGIS+LP + 
Sbjct: 190  WQAELWRALLLDVGEQGMA-QSRAGVHQRYIERINSLEAAPKGLPARVIVFGISSLPAQV 248

Query: 224  IDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSP 283
            ++AL  +     V L + NPC+H+W DI   K L R   Q ++  +  G  V +  +   
Sbjct: 249  LEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLR--HQYKRQARKAGMPVVLDPQTL- 305

Query: 284  LKGDVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQ----------SELELFI 333
                            H   + LLA+ GK GRD + LL   D             ++LF 
Sbjct: 306  ----------------HQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSVFRDGRIDLFT 349

Query: 334  EIQRDSLLHHIQADILHLQEHQDDAKFASSGHKPSIAAQ-DDSLQIALCHSPIREVEVLH 392
            +    +LL  +Q DIL L+   +  +     H P +  + D S++  + H   REVE+LH
Sbjct: 350  DGTPTTLLSQLQDDILELRPLNETRE-----HWPIVDTERDGSIRFHVAHGAQREVEILH 404

Query: 393  DRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFG--NAPGERFIPFSISDRSADQES 450
            D+LLA F  DP+L+PRD+IVMVPDI++YAP+I+AVFG  +    RFIPF+++D+      
Sbjct: 405  DQLLAYFSADPTLRPRDIIVMVPDIDSYAPHIRAVFGQLDRSDPRFIPFTLTDQGQRGRD 464

Query: 451  PILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNS 510
            P+L A   LL LP SR   SE+L+LL+ PA+  RF IDE +  T  RW+E AGIRWG+++
Sbjct: 465  PLLIAVEHLLKLPDSRFPVSEILDLLDVPALRERFGIDEADLPTLHRWIEGAGIRWGMSA 524

Query: 511  DTGAEFELPAS-EQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGK 569
            +  A   LPA  EQN+W FG+ RMLLGYA+   +  YE     + PY+++ G+ A L G 
Sbjct: 525  EHRAGLGLPAELEQNSWHFGLRRMLLGYAV-GSSNAYE----GIEPYDEIGGLDAALIGP 579

Query: 570  LAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQ-GELALKTIRDSLVNLKQQ 628
            L   +  L     +L +  S +QW   L +L++  F    +  +  L  + D      + 
Sbjct: 580  LVALLDALEVAHQELTRPASPQQWGSRLQDLMQLFFQASNEHDDYLLAQLEDLRETWLET 639

Query: 629  LADAGYQQAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMND 688
                G    +   ++R+     L   R+SQRFLAG VNFCTLMPMR+IPF+ VCLLGMND
Sbjct: 640  CESVGLHDELPLTVVREAWLAGLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMND 699

Query: 689  GVYPPNEMVEGFDLRNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSER 748
            G YP  +    FDL     R GDRSRRE+ RYL LEALLSA+E+LYIS+VGRSI+DNSER
Sbjct: 700  GDYPRAQPPLDFDLMGGDYRPGDRSRREDDRYLLLEALLSAREKLYISWVGRSIRDNSER 759

Query: 749  VPSVLVSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAG----S 804
              SVL+ +L ++    + LA        D  + L++ LT ++P+ PFS + F  G    S
Sbjct: 760  PASVLIGQLRDHLASGWRLA--------DDSKPLLDALTQEHPLQPFSARYFHEGDELFS 811

Query: 805  FAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVS 864
            +A EW     R      D  T  +  L        L L +LQ F R PV +FF +RLKV 
Sbjct: 812  YASEW-----RMLHGVCDH-TDKNQVLEPYVQEEPLGLGQLQDFLRNPVRHFFSQRLKVF 865

Query: 865  FEPPLAVLEDDEPFALDGLSAYQLRDELVENLLACRDGAERDQVVAQFAKQQRAQGKLPV 924
            FE   A L DDEPF LD L  Y L D L+E  L   D  + D  +   AK+ +  G LP+
Sbjct: 866  FEAIEAPLADDEPFVLDALQRYSLSDSLLEAALVRLD--QPDLALTAHAKRLQNSGLLPM 923

Query: 925  AAFGDL---ELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQPFDDGREVLLRGWLVKR 981
            A FG+    EL +     L   +++  L   P     + + LQ       V + GWL   
Sbjct: 924  AGFGECMQRELIEPLPDLLQRYQQLLALWPTP-SVSAVPVSLQLLG----VNVEGWL--- 975

Query: 982  YQSGLVRARSGAI----------------RSEDLLAAWIDHLCLAASGKAVTTHLIGYER 1025
              SGL +   GA+                +   L+  W++HL   A+G ++TT L+  + 
Sbjct: 976  --SGLHQRSDGAVLAITAIPNSIGSTKTRKWHRLIRPWVNHLVACANGLSLTTALVASD- 1032

Query: 1026 KEGVQHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALACV------------ 1073
                   +L P  +   A+ LL +++  +  GM QPL    KTA A +            
Sbjct: 1033 ----DSLLLAPFEE-PVAQRLLGDMLQAWQTGMRQPLPIAVKTAFAWLGQTDPVKAEAAA 1087

Query: 1074 -EAGFSRGKWQEDEEKSYKKMADTFNDSFYIKGEGGNRYIARIWPQWSDELAKTL 1127
             +A    G+  E E +    +A  F D   +  +         +P W D L + L
Sbjct: 1088 RKAYEGDGQTFEGERRESPALARQFPDFDALMAD-------ETFPDWCDALYRPL 1135