Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1157 a.a., DNA helicase/exodeoxyribonuclease V, gamma subunit from Pseudomonas syringae pv. syringae B728a

 Score =  642 bits (1657), Expect = 0.0
 Identities = 420/1120 (37%), Positives = 605/1120 (54%), Gaps = 99/1120 (8%)

Query: 2    FTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASEL------- 54
            F V   N+ + L+ L+V  ++  PL  P   E  LVQS G++QWLK+ALA +        
Sbjct: 11   FMVVQGNRPDELRSLVVSWMRRYPLA-PLENEIALVQSNGIAQWLKLALAEDAQDEDNGG 69

Query: 55   -GVAANLEFPLPATFIWQMFTQVL--PDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPL 111
             G+AA ++  LP +F+W ++  VL   ++PQ S  +K  ++WRLM LLP L+++  F+PL
Sbjct: 70   CGIAAAIDVQLPGSFMWTLYRMVLGADEIPQTSLLDKTPLTWRLMRLLPSLINQPHFEPL 129

Query: 112  QRYLQDDEDDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVE--------IADQHP 163
            QR+L DD D  KR+QL+E+++D+FD Y VYR DW+  W AG   +         ++  + 
Sbjct: 130  QRFLTDDTDLRKRYQLSERLSDLFDQYQVYRADWLQDWAAGRHQLRDVRGQSRPLSAANC 189

Query: 164  WQPILWRELYAYTHKQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRY 223
            WQ  LWR L      +G S   RA ++QRFIE++ +        P R+ +FGIS+LP + 
Sbjct: 190  WQAELWRALLDDVGAEGMS-QSRAGVHQRFIERIGNMTEAPPGLPARVIVFGISSLPAQA 248

Query: 224  IDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSP 283
            ++AL  +     V L + NPC+H+W DI   K L R   Q ++  + +G  + +  +   
Sbjct: 249  LEALAGLARFSQVLLCVHNPCRHHWTDIVADKDLLR--HQYKRQARKSGMPMVLDPQAL- 305

Query: 284  LKGDVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQ----------SELELFI 333
                            H   + LLA+ GK GRD + LL  +D             ++LF 
Sbjct: 306  ----------------HQHAHPLLAAWGKQGRDYINLLDSHDDPRSYRSSFKDERIDLFS 349

Query: 334  EIQRDSLLHHIQADILHLQEHQDDAKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHD 393
            E +  +LL+ +Q DIL L+   D+ +       PS   +D S++  + HS  REVEVLHD
Sbjct: 350  ESEPTNLLNQLQDDILELRP-LDETRELWPAVNPS---EDRSIRFHVAHSAQREVEVLHD 405

Query: 394  RLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGE--RFIPFSISDRSADQESP 451
            +LLA F +DP L+PRDVIVMVPDI++YAP+I+AVFG    E  RFIPF+++D+      P
Sbjct: 406  QLLARFSKDPGLRPRDVIVMVPDIDSYAPHIRAVFGQIEREDRRFIPFTLADQGQRGREP 465

Query: 452  ILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSD 511
            +L A   LL LP SR   SE+L+LL+ PA+ ARF I E +  T  RW+E AGIRWGLN+ 
Sbjct: 466  LLIAVEHLLKLPDSRFPVSEILDLLDVPALRARFRIQERDLPTLHRWIEGAGIRWGLNAQ 525

Query: 512  TGAEFELP-ASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGKL 570
              A   LP A EQN+W FG+ RMLLGYA+ A A         + PY+++ G+ A L G L
Sbjct: 526  QRAGLGLPDALEQNSWHFGLRRMLLGYAVGAGAAY-----DGIEPYDEIGGLDAALIGPL 580

Query: 571  AHFVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGE----LALKTIRDSLVNLK 626
               +  L    ++L+   + E W   L  LL+  F  D + +      L+T+R+   N  
Sbjct: 581  VALIDALQVAHTELSTPTTPEAWGARLQSLLQLFFLADSEHDDYLLAQLETLRE---NWL 637

Query: 627  QQLADAGYQQAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGM 686
            +  A       +   ++R+     L   R+SQRFLAG VNFCTLMPMR+IPF+ VCLLGM
Sbjct: 638  ETCATVRLTDELPLTVVREAWLAGLDQGRLSQRFLAGSVNFCTLMPMRAIPFKVVCLLGM 697

Query: 687  NDGVYPPNEMVEGFDLRNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNS 746
            NDG YP  +    FDL     R GDRSRRE+ RYL LEALLSA++QLY+S+VG SI+DNS
Sbjct: 698  NDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYLLLEALLSARDQLYVSWVGHSIRDNS 757

Query: 747  ERVPSVLVSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAG--- 803
            ER  SVL+ +L ++    + LAG+ + +     +RL++ LT  +P+ PFS   F AG   
Sbjct: 758  ERPASVLIGQLRDHLASGWKLAGETDPDGKHDDQRLLKALTVNHPLQPFSANYFHAGTGY 817

Query: 804  -SFAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVEYFFKRRLK 862
             SFAREW      +     D   P+   L        L + +LQ F R PV++FF +RLK
Sbjct: 818  FSFAREW------RLLHETDLQVPVPQALPAHEQEEPLSIAQLQDFLRNPVKHFFSQRLK 871

Query: 863  VSFEPPLAVLEDDEPFALDGLSAYQLRDELVENLLACRDGAERDQVVAQFAKQQRAQGKL 922
            + FE   A L D+EPF LD L  Y L + L+   +   D  + D  +   A + +A G L
Sbjct: 872  IYFEVAEAPLADEEPFVLDALERYGLSESLLSAAMVSPD--DMDAALKTQALKLQASGLL 929

Query: 923  PVAAFGDLELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQPFDDGREVLLRGWLVKRY 982
            P+A FG L  ++  +    +  +   L    L  E +   L        V + GWL   +
Sbjct: 930  PLAGFGTLMQSELIEPLPDVLRRYHDLL--TLWPETLSSALPIGFSHAGVSIDGWLGGLH 987

Query: 983  QSG-----LVRARSGAIRSED------LLAAWIDHLCLAASGKAVTTHLIGYERKEGVQH 1031
            ++      LV A   +I S+       L+  W++HL   A    ++T L+  +     + 
Sbjct: 988  RNARGELLLVTAIPNSIGSKKTRKWHRLIRPWVNHLVACACDLPLSTALVASD-----ET 1042

Query: 1032 QMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALA 1071
             ML PL D   A T L+ L+  +  GM +PL    KTA A
Sbjct: 1043 LMLEPL-DKASAVTTLNHLLTAWLHGMQEPLPVAVKTAFA 1081