Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1163 a.a., exodeoxyribonuclease V, gamma subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  696 bits (1797), Expect = 0.0
 Identities = 434/1132 (38%), Positives = 639/1132 (56%), Gaps = 91/1132 (8%)

Query: 1    MFTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASELGVAANL 60
            MFT+  SN +E L   L   + N+   +    E ILVQSPGM+ WL++ +A+  G+AA L
Sbjct: 1    MFTLVQSNHMERLAKRLADEL-NQASGNVLATEQILVQSPGMATWLRLEIAAHNGIAAAL 59

Query: 61   EFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQDDED 120
             FPLP+ FIW +   +LP VP+ +AF K+AM+W+LM LLP+L+++  F+PL+ YL  D  
Sbjct: 60   SFPLPSNFIWSLCYALLPGVPKENAFTKDAMTWKLMALLPRLIEKPHFEPLRDYLSSDSP 119

Query: 121  DSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVE-----------IADQHPWQPILW 169
              K FQLA ++ADIFD YLVYRPDWI++WE GE+ +            + D   WQP+LW
Sbjct: 120  -LKLFQLASRVADIFDQYLVYRPDWIVTWELGENDLSPTGSPLTQGAALPDNCLWQPLLW 178

Query: 170  RELYAYTHKQ-GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALR 228
            R L  Y   + G S +HRANL+Q  +  L++ + D S  P+RLF+FGIS+LPP+ ++ L 
Sbjct: 179  RALVQYNRDELGQSHWHRANLHQALVAALSNPNTDISALPRRLFVFGISSLPPQTLEVLY 238

Query: 229  AMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDV 288
            A+G  I V ++  +PC+ YWGDI D K  A++A                      LK   
Sbjct: 239  ALGSRIPVTMLSLSPCRQYWGDIVDSKLRAKLA----------------------LKYKA 276

Query: 289  ENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELF---IEIQRDS-LLHHI 344
               L E    +  VGN LLA+ GKMGR+ L L+         L     E   DS LL  +
Sbjct: 277  HKMLPEHWEETLEVGNPLLAANGKMGRELLDLVLSLPPEHFTLDDSGYETNDDSHLLGRL 336

Query: 345  QADILHLQEH-----QDDAKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEF 399
            Q DIL ++        D A++ S+  K  +  QD+SL +  CHSP+REVE LHD LL   
Sbjct: 337  QNDILDMEVAGAPLCADLARYQSNEGKFLLDEQDNSLVLRSCHSPLREVETLHDHLLGLL 396

Query: 400  -ERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQ 458
             +R   L  ++++VM+PD+ AYAP+I AVF +  GE +IP++I+DR A +ESP++  FL 
Sbjct: 397  SDRQGRLSAKNIVVMLPDVAAYAPFIDAVFASRRGEHYIPYAIADRGAVEESPLIHGFLT 456

Query: 459  LLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFEL 518
            LL +  SR   SE+L LLE PA+MA+F +DEEE +    W+ EAG+RWG ++ +  +  L
Sbjct: 457  LLDINHSRFGLSEILGLLEIPAVMAKFKLDEEELSRLGNWLSEAGVRWGRDAQSREKLGL 516

Query: 519  PASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLS 578
            PA ++++W FGI R+LLG+++  E   Y        P+  V+G  A+  GKL  F++ L 
Sbjct: 517  PAFDKHSWAFGIRRLLLGFSLGDEGDFY----HGTLPFAGVEGQQAQCVGKLLDFIEHLD 572

Query: 579  ELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGELALKTIRDSLVNLKQQLADAGYQQA- 637
            E  ++ A   S+      L+ L +  F+   + +  L  IR++L + ++ L  +   ++ 
Sbjct: 573  EFAARFAAADSLTLKFAELSRLTDTLFAPLPEYQEELNLIRETLCDTQKALQSSASSESS 632

Query: 638  ---VSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPN 694
               +S  +I Q L +KL+  R+ QRFLAG VNFCTLMPMRSIPF+ VCLLGMN+G+YP  
Sbjct: 633  LSDISLEVICQTLGSKLTDARVGQRFLAGSVNFCTLMPMRSIPFKVVCLLGMNEGIYPRV 692

Query: 695  EMVEGFDL-RNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSERVPSVL 753
            +   GFDL      R GDRSRR + RYLFLEALLSA+EQLYIS++GRS +D+SER+PS+L
Sbjct: 693  QHPVGFDLMAKTPARRGDRSRRLDDRYLFLEALLSAREQLYISFIGRSERDDSERLPSML 752

Query: 754  VSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAF-----IAGSFARE 808
            VSELL+ CE          L +  S  +LV  L  Q P+ PF  + +     I  SFA +
Sbjct: 753  VSELLDCCE----------LSAYVSQGKLVNRLVKQQPLQPFDHRLYLTNQDITASFAAQ 802

Query: 809  WLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPP 868
            W P   R  +    F+  + D + E    + L+L  L RF+R P  +F +RRL++     
Sbjct: 803  WCPQETRPPK---PFIDAVLDEVDEDEHKV-LELASLIRFYRDPARFFCQRRLRLDLSHR 858

Query: 869  LAVLEDDEPFALDGLSAYQLRDELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFG 928
            L  L+D EPF +D L  YQL+D+++   L   D   +   V     +    G LP+A F 
Sbjct: 859  LDALDDSEPFDVDALGRYQLQDKMLNAALEA-DEIRQQLAVDTLCDRLAGAGVLPMAPFD 917

Query: 929  DLELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQ-PFDDGREVLLRGWLVKRYQSGLV 987
             L  A   +    + ++  F+     E E   LR+    + G +++  G + K +  GL+
Sbjct: 918  KLLFASYQRDLAPILDRCRFIMG---ETEGQSLRISLVLNQGHKLV--GTIDKVFAKGLL 972

Query: 988  RARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGYERKEGVQHQMLPPLNDAQQAKTLL 1047
             AR G  +++D+LA ++ HLCL ASG   ++ L+      G  H  LP   D   A T L
Sbjct: 973  VARPGTAKAKDVLALYLRHLCLCASGYRQSSFLLDV----GNFHAFLPLTPD--NALTSL 1026

Query: 1048 SELVALFCQGMNQPLAYFPKTALACVEAGFSRGKWQEDEEKSYKKMADTFND 1099
             + ++ + + +  P    P  A+  +EA  + G     EE+S  +++  ++D
Sbjct: 1027 EDFISHYFESVRTPSPLIPALAMTYIEA-LAEG---ASEEESLAELSTKWDD 1074