Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1192 a.a., exodeoxyribonuclease V, gamma subunit (RefSeq) from Shewanella loihica PV-4

 Score =  721 bits (1862), Expect = 0.0
 Identities = 455/1155 (39%), Positives = 644/1155 (55%), Gaps = 118/1155 (10%)

Query: 1    MFTVYHSNQVETLKILLVHLIKNE-PLDDPFIPESILVQSPGMSQWLKMALASELGVAAN 59
            M  +  SN++E L  LL + ++   P   P   E ILVQSPGMS WL++A+A +  VAA 
Sbjct: 1    MLYLVQSNRMEALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAA 60

Query: 60   LEFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQDDE 119
            LEFPLP++FIWQ+  Q+LPDVP+ +AF K AM+W+LMELLP LL +  F PL  YL+DD 
Sbjct: 61   LEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLKDDA 120

Query: 120  --DDS------KRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQ-----HPWQP 166
               DS      K FQL  +IADIFD YLVYRPDWIL+WE GED +   ++       WQ 
Sbjct: 121  ILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQWQS 180

Query: 167  ILWRELYAYTHKQ-GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYID 225
            +LWREL  Y H     S YHRANL+Q   + L+    D S  P RLF+FGIS++ P+ ++
Sbjct: 181  LLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLE 240

Query: 226  ALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLK 285
             L  + + IDV ++  +PCQHYWGDI D K  AR+A Q       + +Q+ I        
Sbjct: 241  VLYFLAKRIDVVMLNLSPCQHYWGDIVDPKLRARMALQYG-----DKQQLAI-------- 287

Query: 286  GDVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRD----SLL 341
             D E+ L+        VGN LLA+ GKMGR+ L L+ +  +++     E  +D    SLL
Sbjct: 288  -DWESKLE--------VGNPLLANNGKMGRELLDLILELPENDTNFNFECYQDPGSNSLL 338

Query: 342  HHIQADILHLQEHQD----DAK-FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLL 396
            H +Q DIL L    +    DA+ + ++  +  +   DDSL +  CHSP+RE+E LHD LL
Sbjct: 339  HGVQQDILELCTRGETLGPDAELYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHDHLL 398

Query: 397  AEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAF 456
             +  +   L P+D++VM+PD+ AYAPYI AVF +  G+ FIP++I+DR A QESP++ +F
Sbjct: 399  EQLSQSDGLAPKDIVVMMPDVAAYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSF 458

Query: 457  LQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEF 516
            L LL L +SR   +++L +LE PA+M RF +D+++    +RW+E+AG+RWG +  +    
Sbjct: 459  LHLLGLNKSRFALTDILGILEVPAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQ 518

Query: 517  ELPASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQT 576
            +LPA E N+W FGI+R++LGY+   EA +Y            V+G SA+  GKL +F++ 
Sbjct: 519  QLPAFEHNSWAFGIKRLILGYSFSDEAPIYHDS----LALPGVEGQSAQALGKLLNFIEA 574

Query: 577  LSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGELALK-TIRDSLVNLKQQLADAGYQ 635
            + E    L +   +      L  L+E  +   +  EL+ K  +  ++  L ++L    YQ
Sbjct: 575  IDEFNLALGEHCPLSVRITQLQTLVETFYDC-VDEELSQKQELLQAITRLSEELTATQYQ 633

Query: 636  QAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNE 695
              +   +++   T  L+ +R+ QR+LAG VNFCTLMPMRSIPF  VCLLGMNDGVYP  +
Sbjct: 634  SELELEVMQNWFTRHLTESRVGQRYLAGSVNFCTLMPMRSIPFMLVCLLGMNDGVYPRVQ 693

Query: 696  MVEGFDL-RNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSERVPSVLV 754
               GFDL      R GDRSRR + RYLFLEALLSA+EQLYISY+G S +DNSER+PS+LV
Sbjct: 694  HPVGFDLVAQEGPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGHSERDNSERIPSMLV 753

Query: 755  SELLEYCEQNY----CLAGDENLESDDSGR--------RLVEHLTTQYPMVPFSPQAFIA 802
            SEL+EYC+  Y    C    +   +DD+           +++ L    P+ PF  + ++A
Sbjct: 754  SELIEYCQLCYLPENCAHLLKGSNADDTSTADIAKIELAILDQLIITMPLQPFDERLYLA 813

Query: 803  G-------------------SFAREWLPAA------RRQGQ------SSADFLTPLSDYL 831
                                S++ +W P A      +  G+      S+  F+      +
Sbjct: 814  DESEGAECEGAKSEPRRLRQSYSEQWCPRALTEQDKQHDGEQGAKPASAGHFIEAPLSLV 873

Query: 832  LEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDE 891
             +      L+L  L RF+R P +YFF R LK+     +   E+DEPFAL+ LS YQL+  
Sbjct: 874  ADEDKGEPLELSALIRFYRNPAQYFFNRTLKLDLNLSIQADENDEPFALNPLSRYQLQST 933

Query: 892  LVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCH 951
            L+E+  A + G ER    ++  ++ R  G+LP+A F DL L Q      AL  +  +L  
Sbjct: 934  LIED--AVKSGDERPS--SELLERLRLSGQLPLAPFDDLLLKQYQHDIRALVGRTLYLQG 989

Query: 952  QPLEDEEIDLRLQPFDDGREVLLRGWLVKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAA 1011
            +    ++IDL L    D     L G +      GLV  R G   + DL+  ++ HLCL A
Sbjct: 990  ESSHTQDIDLLL---SDSAATALVGRIDGVSAKGLVNYRPGTANARDLIRVYLRHLCLNA 1046

Query: 1012 SGKAVTTHLIGYERKEGVQHQMLPPLND-----------AQQAKTLLSELVALFCQGMNQ 1060
            S     +     ER E    Q    L D            +QA   LS     + QG +Q
Sbjct: 1047 S----VSDNSDVERHEATPWQRHSYLLDIGHFHAFAPITPEQALNQLSLWAEHYHQGQSQ 1102

Query: 1061 PLAYFPKTALACVEA 1075
            PL + P+TA A VEA
Sbjct: 1103 PLPFMPRTAFAYVEA 1117