Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1270 a.a., exodeoxyribonuclease V, gamma subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  708 bits (1827), Expect = 0.0
 Identities = 450/1197 (37%), Positives = 652/1197 (54%), Gaps = 150/1197 (12%)

Query: 1    MFTVYHSNQVETLKILLVHLIKNEPLDDPFIPES--ILVQSPGMSQWLKMALASELGVAA 58
            M  +  SNQ+E L   L   ++ +PL    + +S  ILVQSPGMS WL++ +A + G+AA
Sbjct: 1    MLKLIQSNQMEVLCAHLAAYLR-QPLPGGCLLQSEHILVQSPGMSTWLRLEIAKQNGIAA 59

Query: 59   NLEFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQDD 118
             LEFPLP++FIWQ+   +LP+VP+ +AF K AM+W+LM+LLP+LL+   F PL+ YL   
Sbjct: 60   ALEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLEEESFGPLRHYLGHI 119

Query: 119  E---------------------DDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGE--DV 155
            E                     D+ K +QL  +IADIFD YLVYRPDWI +WEA E  D 
Sbjct: 120  ESSSPDSTTKNNQLEASNSIAADNIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLDA 179

Query: 156  VEIADQHPWQPILWRELYAYTHKQ-GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIF 214
            +++ ++  WQPILWR L A+   +   S YHRANL+Q  I  LA      +  P+RLF+F
Sbjct: 180  LKLNEEQRWQPILWRALIAFNRDELRQSHYHRANLHQDLIAALADSTHSLAKLPERLFVF 239

Query: 215  GISALPPRYIDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQ 274
            GIS++ P+ ID L  +   IDV ++  +PCQHYWGDI D ++ AR+A      LQ  G++
Sbjct: 240  GISSMAPQTIDVLHQLAARIDVIILNLSPCQHYWGDIIDPRHRARMA------LQYAGKR 293

Query: 275  VTIGSEVSPLKGDVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIE 334
                             L E       VGN LLA+ GKMGR+ L +L +      +   +
Sbjct: 294  ----------------QLAEQWEDKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDD 337

Query: 335  IQRD------------SLLHHIQADILHLQEHQ-----DDAKFASSGHKPSIAAQDDSLQ 377
            +  +            S+L  +Q DIL +Q        D   + +  ++  +   DDS+Q
Sbjct: 338  VYCEPCGDPNDPDCNASMLAGVQYDILEMQTLDRVLGPDAELYQAVTNRRRLKRVDDSIQ 397

Query: 378  IALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFI 437
            I  CHSP+REVE LHD LL   +RD  L P+D++VM+PD+ AYAPYI AVF    G  +I
Sbjct: 398  IKSCHSPLREVETLHDHLLDLLDRDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYI 457

Query: 438  PFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKR 497
            P++I+DR A QESP++ +FL LL + QSR   +++L +LE PAI+ RF ++E+E    +R
Sbjct: 458  PYAIADRGAAQESPLINSFLNLLNINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRR 517

Query: 498  WVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAP-- 555
            W++EAG+RWG +  +  +  +PA EQN+W FGI+R++LGYA+  +A LY+   Q  AP  
Sbjct: 518  WLDEAGVRWGRDEQSRVKQGVPAFEQNSWAFGIKRLILGYALRNDAPLYQASPQ--APSY 575

Query: 556  --YNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGEL 613
               + V+G SA+  GKL +F++ L E   QLAQ Q+  Q  + L +LL   ++ D     
Sbjct: 576  LVVSGVEGQSAQALGKLLNFIEVLDETTLQLAQPQAPCQRLFELTQLLNAFYAPDEDERE 635

Query: 614  ALKTIRDSLVNLKQQLADAGYQQAVSPA-----------------------IIRQVLTNK 650
             L+ +RD++  L+Q+L  A    + + A                       ++ Q    +
Sbjct: 636  QLQEVRDAIATLEQELQAASPADSYTAAYDVNPYFLDQSGLHSNALNLSIEVLAQWFNQR 695

Query: 651  LSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLR-NVQRRV 709
            L+ +R+ QR+LAG VNFCTLMPMRSIPF+ VCLLGMNDG+YP  +   GFDL  +   R 
Sbjct: 696  LTESRVGQRYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGIYPRMQHPVGFDLMAHFGARK 755

Query: 710  GDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNY---- 765
            GDRSRR + RYLFLEALLSA+EQLYISY+GRS +DNSER+PS+LVSEL+EYC+  Y    
Sbjct: 756  GDRSRRLDDRYLFLEALLSAREQLYISYIGRSERDNSERIPSMLVSELIEYCQLCYVPES 815

Query: 766  CLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAF---------IAGSFAREWLPAARRQ 816
              A    + ++ + + L+E + +  P+ PF P+ +         I  S++++W P     
Sbjct: 816  LTAETPAVGNEAAQQALLETIISHQPLQPFDPKLYQSTEPQAQAIKQSYSQQWCPPDIST 875

Query: 817  GQSSADFLTPLSDYLLE---------------VSWPMELDLVELQRFWRLPVEYFFKRRL 861
                  F+   +  +LE               +S    +D+    RF+R P +YFF R L
Sbjct: 876  QSIQRRFIDANTQIVLEDDTIGDSDIQQNIEPLSEEEHVDISAFIRFFRHPAQYFFNRTL 935

Query: 862  KVSFEPPLAVLEDDEPFALDGLSAYQLRDELVENLL---ACRDGA---ERDQVVAQFAKQ 915
            KV     +   ++DEPF+L+ L  Y L+  L+++ L   A   GA    + Q  ++  ++
Sbjct: 936  KVDLNLNIQADDNDEPFSLNALERYLLQARLLDDALEQGALEQGALEQGQAQPSSELLQR 995

Query: 916  QRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQ---PFD----- 967
             +A G LP+  F DL L Q +     L  +  F+    +     D+RL    P       
Sbjct: 996  LKASGNLPMQPFDDLLLRQYSHDIAPLIGRTLFM-RGDVAPRHADIRLAFELPLSHVAAT 1054

Query: 968  ---DGREVLLRGWLVKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTH----- 1019
                 + VLL G +      GLV  R G+    D+LA ++ HLCL A+G    +      
Sbjct: 1055 TKVSVKRVLLEGRIDDISPKGLVSCRPGSAHGRDILALYLRHLCLMAAGLTQPSDQQPSY 1114

Query: 1020 -LIGYERKEGVQHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALACVEA 1075
                Y    G  H + P     +QA   L  L+  F QG   PL + PKT+LA   A
Sbjct: 1115 LQPSYLLDMGHFHALSPIA--PKQAHDRLVHLLQHFYQGQLHPLCFMPKTSLAYASA 1169