Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1234 a.a., exodeoxyribonuclease V, gamma subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  714 bits (1842), Expect = 0.0
 Identities = 442/1167 (37%), Positives = 644/1167 (55%), Gaps = 121/1167 (10%)

Query: 1    MFTVYHSNQVETLKILLVHLIKNEPLDDPFIPES--ILVQSPGMSQWLKMALASELGVAA 58
            M  +  SNQ+E L   L   ++ +PL    + +S  ILVQSPGMS WL++ +A + G+AA
Sbjct: 1    MLKLIQSNQMEVLCAHLAAYLR-QPLPGAGLLQSEHILVQSPGMSTWLRLEIAKQNGIAA 59

Query: 59   NLEFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQD- 117
             LEFPLP++FIWQ+   +LP+VP+ +AF K AM+W+LM+LLP+LLD   F PL+ YL   
Sbjct: 60   ALEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHT 119

Query: 118  --------------------DEDDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDV-- 155
                                  DD K +QL  +IADIFD YLVYRPDWI +WEA E +  
Sbjct: 120  IDNLESSAADTHSNHQLGAISADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLES 179

Query: 156  VEIADQHPWQPILWRELYAYTHKQ-GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIF 214
            +++ ++  WQPILWR L AY   +   S YHRANL+Q  I  L       +  P+RLF+F
Sbjct: 180  LKLNEEQSWQPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSANSLAKLPQRLFVF 239

Query: 215  GISALPPRYIDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQ 274
            GIS++ P+ ID L  +   IDV ++  +PCQHYWGDI D ++ AR+A      LQ  G++
Sbjct: 240  GISSMAPQTIDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMA------LQYAGKR 293

Query: 275  VTIGSEVSPLKGDVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIE 334
                             L E       VGN LLA+ GKMGR+ L +L +      +   +
Sbjct: 294  ----------------QLAEQWEDKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDD 337

Query: 335  IQRD------------SLLHHIQADILHLQEHQ-----DDAKFASSGHKPSIAAQDDSLQ 377
            +  +            S+L  +Q DIL +Q        D   +    ++  + A DDS+ 
Sbjct: 338  VYCEPCGDPNDPHTNASMLAGVQYDILEMQTLDRVLGPDAELYQEVANRRVLTADDDSIL 397

Query: 378  IALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFI 437
            I  CHSP+REVE LHD LL   + D  L P+D++VM+PD+ AYAPYI AVF    G  +I
Sbjct: 398  IKSCHSPLREVETLHDHLLDLLDSDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYI 457

Query: 438  PFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKR 497
            P++I+DR A QESP++ +FL LL + QSR   +++L +LE PAI+ RF ++E+E    +R
Sbjct: 458  PYAIADRGAAQESPLINSFLNLLNINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRR 517

Query: 498  WVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAMPAEAGLYELG--GQWLAP 555
            W++EAG+RWG +  +  +  +PA EQN+W FGI+R++LGYA+  +A LY+    G     
Sbjct: 518  WLDEAGVRWGRDEQSRLKQGVPAFEQNSWAFGIKRLILGYALRDDAPLYQSSPQGMHYLT 577

Query: 556  YNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGELAL 615
               V+G SA+  GKL +F++ L E    LA+ Q+       L ELL   ++ D      L
Sbjct: 578  VAGVEGQSAQALGKLLNFIEVLDETTQVLAKAQAPSLRLLELTELLNAFYAPDEDEREQL 637

Query: 616  KTIRDSLVNLKQQL-----ADAGYQQ---AVSPAIIRQVLTNKLSGTRISQRFLAGQVNF 667
            + IRD++  L+Q+L     AD G Q     +S  ++      +L+ +R+ QR+LAG VNF
Sbjct: 638  QEIRDAIAALEQELLAASPADMGAQANDLDLSIEVLALWFNQRLTESRVGQRYLAGSVNF 697

Query: 668  CTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDL-RNVQRRVGDRSRREESRYLFLEAL 726
            CTLMPMRSIPF+ VCLLGMNDGVYP  +   GFDL  ++  R GDRSRR + RYL+LEAL
Sbjct: 698  CTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHLGARKGDRSRRLDDRYLYLEAL 757

Query: 727  LSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNY----CLAGDENLESDDSGRRL 782
            LSA+EQLYISY+GRS +DNSER+PS+LVSEL+EYC+  Y      A   N+ ++ + + L
Sbjct: 758  LSAREQLYISYIGRSERDNSERIPSMLVSELIEYCQLCYLPESLAAEASNVSNEVAQQAL 817

Query: 783  VEHLTTQYPMVPFSPQAF------------IAGSFAREWLPAARRQGQSSADFLTPLSDY 830
            +E + +  P+ PF P+ +            I  S++++W P           F+   +  
Sbjct: 818  LEAIVSHQPLQPFDPKLYQAALPQALTSHGIKQSYSQQWCPPDSNSQLQHGRFIEAHTQI 877

Query: 831  LLE-------------VSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEP 877
            +LE             +     +D+    RF+R P +YFF R LKV     +   ++DEP
Sbjct: 878  VLEDDAIGDSVQDIEPLGEAEHVDISAFIRFFRNPAQYFFNRTLKVDLNLNIQADDNDEP 937

Query: 878  FALDGLSAYQLRDELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQ 937
            F+L+ L  Y L+ +L+ + L       +++   +  ++ +A G LP+  F DL L Q + 
Sbjct: 938  FSLNALERYLLQAQLLGDALE----QGQNEPSTELLQRLKASGNLPMQPFDDLLLRQYSH 993

Query: 938  QALALAEKIGFLCHQPLEDEEIDLRLQ---PFDD------GREVLLRGWLVKRYQSGLVR 988
                L  +  F+    +     D+RL    P  +       + V+L G +      GLV 
Sbjct: 994  DIAPLIGRTLFM-RGDVAPRHADIRLSFELPHQNSGTQLKAKRVILEGRIDDISPKGLVT 1052

Query: 989  ARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGYERKEGVQHQMLPPLNDAQQAKTLLS 1048
             R G+    D+LA ++ HLCL A+G A  ++L      +      L P+  A  A   L+
Sbjct: 1053 CRPGSAHGRDILALYLRHLCLMAAGVAQPSYLQPSYLLDMGHFHALAPITPA-LAHAQLA 1111

Query: 1049 ELVALFCQGMNQPLAYFPKTALACVEA 1075
             L+  F QG   PL + P+T+LA   A
Sbjct: 1112 NLLKYFYQGQIHPLCFMPRTSLAYASA 1138