Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas fluorescens FW300-N2E2

 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 109/509 (21%), Positives = 192/509 (37%), Gaps = 93/509 (18%)

Query: 350 LSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCG 409
           + FDDL+  L   L  D   +L E+ +      ++DE+QDT+  QY +   L     Q  
Sbjct: 181 VDFDDLIL-LPVKLFQDHADIL-EKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRNQ-- 236

Query: 410 LLMIGDPKQAIYAFRGA--DIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATH 467
             ++GD  Q+IYA+RGA  +    +K          L  N+RS++ ++   N + S+  H
Sbjct: 237 FTVVGDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPH 296

Query: 468 PFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACA 527
            F                 +K+ WS  G           +++   + + +     AE  A
Sbjct: 297 EF-----------------EKQLWSEMGH---------GDEIRVIRCRNE--DAEAERVA 328

Query: 528 AQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDS 587
            +I            + H        D A+L R   +A+++   L    I    LS  +S
Sbjct: 329 MEI-----------LSLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQI-PYRLSGGNS 376

Query: 588 VFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNN------------- 634
            F     +D+      +  P+D+      +      + ++ L+ L N             
Sbjct: 377 FFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKISMYAAT 436

Query: 635 DE--------NEWEQLIAEFRQY----RRLWSERGVLPMLRAVLTQRHIAERWLAESEGE 682
           DE        + +   +A F+++    R   +    +  LR+++      E WL  +   
Sbjct: 437 DEIGLGEHLDSRFTDRLARFKRFMDKVREQCAGEDPISALRSMVMDIDY-ENWLRTNSSS 495

Query: 683 RWLTDY--LHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLV 740
               DY   ++  L++     ++ D+     +  A+      L    E+ Q  E     V
Sbjct: 496 DKAADYRMSNVWFLIEALKNTLEKDEDGDMTVEDAIGKLV--LRDMLERQQEEEDGAEGV 553

Query: 741 QIVTIHKSKGLEYPLVFL----PFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQ 796
           Q++T+H SKGLE+P VF+      ++ +R S E    + E    +V +T   + LA    
Sbjct: 554 QMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTIEEERRLAYVGITRARQTLA---- 609

Query: 797 ERLAEDLRLLYVALTRAVYGCFIGIAPLR 825
                       A  R  YG  I  AP R
Sbjct: 610 ---------FTFAAKRKQYGEVIDCAPSR 629



 Score = 30.4 bits (67), Expect = 5e-04
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 22/114 (19%)

Query: 21  GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
           G  L+ A AG+GKT  I      L+   G         +    I+ +TFT  A  E+++R
Sbjct: 17  GPLLVLAGAGSGKTSVITRKIAHLIQNCG---------IRAQYIVAMTFTNKAAREMKER 67

Query: 81  IRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTI 134
           +   L   R    RG          L   T HNL ++++     ++     F+I
Sbjct: 68  VGGLL---RAGEGRG----------LTVCTFHNLGLNIIRKEHARLGYKPGFSI 108