Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1229 a.a., Exodeoxyribonuclease V beta chain (EC 3.1.11.5) from Pseudomonas fluorescens FW300-N2E2

 Score =  707 bits (1824), Expect = 0.0
 Identities = 483/1241 (38%), Positives = 671/1241 (54%), Gaps = 100/1241 (8%)

Query: 15   LRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAAT 74
            L FPL G++LIEASAGTGKT+TI+ LYLRLVLGHG   +     L   QILVVTFT+AAT
Sbjct: 9    LAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGPASGFGRELLPPQILVVTFTDAAT 68

Query: 75   AELRDRIRRRLHDARLAFARGA-SDDPLLRSLLAEFTDHNL--AVSLLLSAERQMDEAAI 131
             ELR+RIR RL +A   F     + D L+ +L  EF         + L  A + MDEAA+
Sbjct: 69   KELRERIRTRLAEAARFFRDEIPAPDSLIAALRDEFNAEQWPGCANRLDIAAQWMDEAAV 128

Query: 132  FTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEVRRL 191
             TIH +CQRML ++AF+SGS F     TD S L  +V+ DYWR   Y +     + VR  
Sbjct: 129  STIHSWCQRMLREHAFDSGSLFTQTLETDHSELLGEVLRDYWRLFCYSMQGEALNWVRTH 188

Query: 192  WPAPSALLAEIAGYLSGP--------PVKLTTPLMEGDLAALQQAQIARICEIK---QHW 240
            W  P+ALL  + G  S          P +L        +AA  Q + A + ++K   + W
Sbjct: 189  WGGPAALLPRVRGLFSSEHGNGDGLEPAEL--------IAAALQERSAALLDLKAPWRQW 240

Query: 241  LVEREEI------EPAVTGSDLHKNSQNALLRRLPILDAWAQSETHDL-HVPSELEEFTQ 293
             VE  EI        +V G  +         +++    AW   E+ +L  + +     T 
Sbjct: 241  AVELLEICQQGVASKSVDGRKMQARYFEPWFQKIT---AWVDDESLELLDIGTGFTRLTP 297

Query: 294  SGLLAKSKKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKA----KSTHHW 349
             G+ A++ KG  P     + + +  A   +L TP     + H   W+       K     
Sbjct: 298  EGM-AEAWKGEVPNHPGLDAMASLKASLDALPTPDAA-VLQHAAQWVGTRFEAEKRRRAE 355

Query: 350  LSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL---DYP 406
            + FDD+L +L AAL  D    L   IR  +PVA+IDEFQDTDP+QY IF  +Y    + P
Sbjct: 356  MGFDDMLLRLDAALQADGGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNDP 415

Query: 407  QCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAH-YTLGTNWRSSAAMVAAVNQVFSSA 465
              GL +IGDPKQAIYAFRGADI+TY++AR       +TLGTN+RSS AMV AVN +F  A
Sbjct: 416  GTGLFLIGDPKQAIYAFRGADIYTYLRAREATAGRLHTLGTNFRSSHAMVGAVNHIFQKA 475

Query: 466  TH------PFIYSDDIPFQPV---AASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKT 516
                     F++ +     PV   +      K    + GQ   AL  W     D+P S  
Sbjct: 476  ESRPKGRGAFLFREPSGENPVPFLSVESQGRKESLQVAGQAVAALNIWHLSS-DQPLSGA 534

Query: 517  DYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAG----DLAVLVRTGNEARMVRDAL 572
             Y   MA ACA++I  +L    SG   F     +  G    D+A+LVR G EA+ VRDAL
Sbjct: 535  VYRQSMAAACASEITALLNGGQSGRDGFTVDGKVLRGVRPADIAILVRDGKEAQAVRDAL 594

Query: 573  SQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDAL 632
            S +G+ SVYLS++DSVFAS  A+D+   L A  +P+ ER LRAA+AS    L  +EL+ L
Sbjct: 595  SARGVRSVYLSDKDSVFASQEARDLLIWLRACAEPDAERPLRAALASITLNLALTELERL 654

Query: 633  NNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHIS 692
            N DE  WE  + +FR YR +W  +GVLPMLR +L    + +  +A S+GER LT+ LH+ 
Sbjct: 655  NQDELAWEARVMQFRGYRTVWRSQGVLPMLRRLLHDFELPQALMARSDGERVLTNLLHLC 714

Query: 693  ELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLE 752
            ELLQQA  E+D +Q L+R L++ +A + Q     +EQI RLES+ +LV++VTIHKSKGLE
Sbjct: 715  ELLQQAAGELDGEQALIRHLSEHLALSGQ---VGEEQILRLESDEQLVKVVTIHKSKGLE 771

Query: 753  YPLVFLPFVMSYRESSEGK---YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVA 809
            YPLVFLPF+ S +     +   +Y  E+    + L    E +AKAD ERLAEDLRLLYVA
Sbjct: 772  YPLVFLPFICSTKPVDGSRLPLHYHDEANKAQISLKPTAELIAKADDERLAEDLRLLYVA 831

Query: 810  LTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQAL-----LKQC 864
            LTRA + C++G+A L+ G++++  +  H SA+G+LL     GG A L +++     L+  
Sbjct: 832  LTRAQHACWLGVADLKRGSNNR--SILHVSALGYLL-----GGGAPLAESVELRRWLQDL 884

Query: 865  ENLPDVVQCPP-PKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGL-VMQSSHAR 922
            +   D V   P P+  ++ Y+PP+ +   L      +     W + SYS L + +S    
Sbjct: 885  QQGSDAVSYQPMPEATDEHYRPPRNEAVLLEPLVPLRKASENWWIASYSALRISESLSEG 944

Query: 923  HDPLQELP----LLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVD 978
             D   E P    L +    D D+ +E       +V   I  FPRG  PGTFLH L E   
Sbjct: 945  SDTAPESPQAQKLFDDERLDPDAPRE-----TLAVGGDIHRFPRGPNPGTFLHGLLEWAA 999

Query: 979  FQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPL----DGKALRLQQIMAA 1034
             +  + +  + +  +    + +    W+  L   +  ++  P+    D   + L+ +   
Sbjct: 1000 GEGFSSAPADIEDAIARRCNRRGWKGWITTLSDWLRHLIKMPMHVGNDQAPVVLEHLSRF 1059

Query: 1035 QRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHA----VQGMLKGFIDLVFQY 1090
            Q   E+EF      +D   L+++  R      H G     A    + GM KGFIDL F++
Sbjct: 1060 Q--VEMEFWFASHKVDVQKLDQLVCRF----THGGVARVAAEPVLLNGMFKGFIDLTFEH 1113

Query: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYE 1150
             GRYYV D+KSN LG D  AY    +  ++ +HRYDLQY +Y LALHR L++RL  Y+Y+
Sbjct: 1114 DGRYYVADYKSNWLGVDDMAYTVPAMEQSILDHRYDLQYVLYLLALHRQLKARLPDYDYD 1173

Query: 1151 QHFGGVFYLFLRGMDGRGDQGVFHTKPSLALLDELDGLIAG 1191
            +H GG  YLFLRG      QGV+ TKP  AL+++LD L  G
Sbjct: 1174 RHVGGALYLFLRGTRS-ASQGVYFTKPPRALIEQLDRLFQG 1213