Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1182 a.a., exodeoxyribonuclease V, beta subunit from Pseudomonas stutzeri RCH2

 Score =  562 bits (1449), Expect = e-164
 Identities = 434/1237 (35%), Positives = 620/1237 (50%), Gaps = 122/1237 (9%)

Query: 12   LDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTE 71
            LD L  P  G  LIEASAGTGKT+T+  LY RL+L            LSV QILVVT+T 
Sbjct: 3    LDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLL---------ERQLSVGQILVVTYTT 53

Query: 72   AATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAI 131
            AATAELR+RIR RL D    +    S D  L  L A + D      LLL A    DEAAI
Sbjct: 54   AATAELRERIRARLADLLAVYDGTPSTDDFLNRLHARYPDEPSRRRLLL-AVHGFDEAAI 112

Query: 132  FTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEVRRL 191
            FTIHGFCQR L   AFE+G  F++E   D+  +   ++AD WR +      + A  + + 
Sbjct: 113  FTIHGFCQRALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELADADPAWARFLAKS 172

Query: 192  WPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIA--RICEIKQH----WLVERE 245
               P  L   +  +L G P     P      A L+  + A  R  ++ +     W+ E  
Sbjct: 173  RITPVWLRQRLRSHL-GKPYLRVEPQGAPVAADLRPVEAAWQRAADLWKRAGSAWVAEL- 230

Query: 246  EIEPAVTGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKKGNP 305
             +         HK+ + A  +    LDA+         +P    +F    L    KKG+ 
Sbjct: 231  -LAHGGLSQSTHKSIKFASWQM--DLDAYFADPAVMFDLPEGAAKFGVRALTKACKKGHD 287

Query: 306  PQLALFERIEAFLAEPVSLKTP--------LLVHAIHHCRHWLAKAKSTHHWLSFDDLLT 357
              +         LA+ V+   P        L V  +      L + K+    L+FDDLL 
Sbjct: 288  APVCELAHALDELADQVAEALPAGKQRLIALQVALLERLNRELPERKAAQRLLAFDDLLN 347

Query: 358  QLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPK 417
            +L  AL       L   +R  YP+A+IDEFQDTDP+QY+IF+R+Y    +  L  +GDPK
Sbjct: 348  RLDQALQGPVGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGSEASLCFVGDPK 407

Query: 418  QAIYAFRGADIFTYIKARNQVNAH-YTLGTNWRSSAAMVAAVNQVFSSATHPFIYSD-DI 475
            QAIYAFRGAD+ TY+ A+ Q +   + L TN+RS+  ++AA+NQ+F    HP  ++  D+
Sbjct: 408  QAIYAFRGADLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFD---HPQPFAQPDL 464

Query: 476  PFQPVAASPGADKRHWSL----EGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQ 531
             + PV A   ADK    L    EG+  P    W  +D   P  K +     A   A +I 
Sbjct: 465  RYPPVGA---ADKPRAGLRLLEEGEAAPLSLVWLGDD---PLGKGEAAQLAASDTARRIA 518

Query: 532  HILTASASGAATFHRG---EAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSV 588
              L  +A G A F +      ++ GD+AVLV    +A M+ D L+ +G+ SV    RDSV
Sbjct: 519  LQLAGAAEGRAGFDKDGVFTPLKGGDIAVLVANHRQAGMIADELAARGVPSV-RRGRDSV 577

Query: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648
            + S+ A ++  +L A  +P  E LLR A+A+ L   +A++L    +D+ +W+       +
Sbjct: 578  WRSEEAGELAAVLAAYAEPGREGLLRYALATRLLGRSAADLARCQDDQQQWDAEREAAER 637

Query: 649  YRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGL 708
            Y +LW ++G + + RA L ++ +AER LA  +GER LT+ LH+ ELLQ  +      + L
Sbjct: 638  YHQLWQQQGFMRVFRAWLDEQAVAERLLARVDGERRLTNLLHLGELLQAESLLRPGLEPL 697

Query: 709  LRFLTQAMADAAQGL-GGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFV----MS 763
            L     A  +A +G  G  +E + RLES+   VQIVTIH SKGLEYPLVF PF+    + 
Sbjct: 698  L-----AWFNAQRGSEGAGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKLL 752

Query: 764  YRESSEGKYYDAESATTWVDLTGN--EEALAKADQERLAEDLRLLYVALTRA------VY 815
             +     + +DA+     +DL     E+ L +A QE  AE LRL YVALTRA       +
Sbjct: 753  GKNRDSARCHDAQGQPL-LDLGSGELEDNLERARQEVFAEQLRLAYVALTRARDRLWLHW 811

Query: 816  GCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGG----------IAD-----LQQAL 860
            G      P ++G+ + E    H SA+ +LL   +  G          +AD     L+ A+
Sbjct: 812  GPVNLCKPKKDGSLADE--GLHSSALAWLLHGRELPGEQPLSELGNYLADFNGGSLRLAI 869

Query: 861  LKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSH 920
             +  +     + C P +  E + Q P          +L++ +   WR+ S+SGL      
Sbjct: 870  ERLVQGSDGRMACLPLESREASAQGPGRAVPPQQLSQLNRNLHSAWRIGSFSGL------ 923

Query: 921  ARHDPLQELPLLEVGGFDLDSAQERDGAALESVER---SIFNFPRGARPGTFLHSLFEEV 977
                           G  ++ A +RD  A+          F FPRGAR GT LH++ E+ 
Sbjct: 924  -------------AAGMHME-APDRDALAIPDAGEPGSGFFAFPRGARAGTCLHAVLED- 968

Query: 978  DFQQSAHSEPNTKIILE-LMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQR 1036
                 A  +   + ++E  +++  +  EW  +    +  VL T +DG  L L  + +A+R
Sbjct: 969  ----WARGKGELEALVEPALQAYGLPLEWQEIATAHLQKVLETDMDGGGLTLAALQSARR 1024

Query: 1037 LTELEFLLPIEVLDAPTLNRI-----TQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQ 1091
            L EL F  P+  LD   L  +         +PL   A  L F +++G LKGFIDL F++ 
Sbjct: 1025 LPELGFTFPVRDLDVARLRALLVDPANGLAEPLREAAARLEFDSLKGFLKGFIDLTFEHD 1084

Query: 1092 GRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQ 1151
            GR+Y+ D+KSN LG D + Y  +RL  A+A   Y LQY IY +AL RFLR RLA ++ EQ
Sbjct: 1085 GRWYIADYKSNWLGPDASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLADFHDEQ 1144

Query: 1152 HFGGVFYLFLRGMDGRGDQGVFHTKPSLALLDELDGL 1188
              GG FYLFLRGM    + GV+  +P  ALLD LD L
Sbjct: 1145 -LGGAFYLFLRGMP---EAGVYFARPDDALLDALDRL 1177