Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 766 a.a., ATP-dependent helicase PcrA from Synechococcus elongatus PCC 7942

 Score = 69.7 bits (169), Expect = 9e-16
 Identities = 126/521 (24%), Positives = 195/521 (37%), Gaps = 102/521 (19%)

Query: 351 SFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGL 410
           SFDDLL      L  D    + ER+R+ +   ++DE+QD +  Q  I S   LD  Q  L
Sbjct: 202 SFDDLLVDACRLLCADMG--IRERVRSRFDFLIVDEYQDINRAQNLIIS--VLDEAQQNL 257

Query: 411 LMIGDPKQAIYAFRGADIFTYI-KARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPF 469
           +++GD  Q IY +RGA     + K R++    YTL  N+RS A  +   N +        
Sbjct: 258 MVVGDDDQTIYEWRGARPQLILDKLRDRQWVQYTLDRNFRSRAPQLLLANALI------- 310

Query: 470 IYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQ 529
                              RH  L    Q   T  W    +     +   +  A A A Q
Sbjct: 311 -------------------RHNRLRSPKQLQGTKAWQHHCEWRSFPSG--SDQAAAIAEQ 349

Query: 530 IQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVF 589
           I              +R       ++ +L+RT  +  ++   L    +  V   ++    
Sbjct: 350 ILE------------YRDRGKPLAEMVILIRTYAQTPLIEQQLIAAQLPYVIPGSQPFYL 397

Query: 590 ASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQY 649
             +V     +LLLA  +  +    R  V + L   T    D L  + +       +  + 
Sbjct: 398 RREV-----KLLLAYLEFAEAE--RNRVQNGLTPATRDRYDQLFRETSSRPSRYLKRPEL 450

Query: 650 RRLWSERGVLPML-RAVLTQRHIAERWLAESEGERWLTDYL----------------HIS 692
             +  E    P L  A +  +   +R       +RWL DYL                 I 
Sbjct: 451 LSMLQEALDNPHLPLATIISQRCRDRLGRNRSLQRWL-DYLGWVLGAQPSSAAAAIAKIE 509

Query: 693 ELLQQATREIDSDQGLLRFLTQAM-ADAAQGLGGSDEQIQR-------------LESERR 738
           +L+      IDSD        +A+  DA Q   G D  +Q              L  E  
Sbjct: 510 QLIDLRRWIIDSDISPESGAQKALIIDALQAFAG-DRAVQSWLQEMAALQEQPPLSDEAS 568

Query: 739 LVQIVTIHKSKGLEYPLVFLPFV-------MSYRESSEGKYYDAESATTWVDLTGNEEAL 791
            V ++T+ K+KGLE+  VF+P +        S RES  G   ++           +E AL
Sbjct: 569 GVNLLTVFKAKGLEWDTVFIPDLDAGIYPFGSSRESESGPGRNSFDPL-------SEVAL 621

Query: 792 AKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQE 832
            ++ QE   E+ R+LYVALTR++    +  A  +     QE
Sbjct: 622 DRSLQE---EERRILYVALTRSINNLHLSSATNQRSPFLQE 659



 Score = 30.0 bits (66), Expect = 8e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 21 GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
          G  ++ A AG GKT TIA    RLV         H   +   +IL  TF   A  ++R++
Sbjct: 17 GRAVVVAVAGAGKTTTIARRIGRLV---------HQVEVPPGRILATTFNRYARGQIREK 67

Query: 81 IRR 83
          + +
Sbjct: 68 LNQ 70