Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1061 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  119 bits (299), Expect = 1e-30
 Identities = 211/852 (24%), Positives = 327/852 (38%), Gaps = 143/852 (16%)

Query: 21  GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
           G+  + A AGTGKT  ++  YL     H    +    PL   +I+V+TFTE A AELR R
Sbjct: 15  GSVAVTAGAGTGKTELLSQRYL----WHLQQASESVSPL---EIVVLTFTEKAAAELRSR 67

Query: 81  IRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQR 140
           IR+ +           +  P     LAE                 ++ A I T H  C R
Sbjct: 68  IRKAV----------GNKWPDRSDWLAE-----------------VEAAQISTFHSLCAR 100

Query: 141 MLTQNAFESGSRFENEFVTD-ESRLKAQVVADYWRRQFYPLPISLA--SEVRRLWPAPSA 197
           +  ++   +G   +   + D   +L  Q V     ++  P    +   SE R L      
Sbjct: 101 ICREHPAAAGQPADFTILDDLAGKLWQQTVLTAAMQELDPSCFDVMDYSEWRSLLET--- 157

Query: 198 LLAEIAGYLSGPPVKLTTPLM---EGDLAALQQAQIARICEIKQH--WLVEREEIEPAVT 252
                   L   PV+    L    E     L QAQ  R+ +I+Q   W    E++  A  
Sbjct: 158 --------LLDDPVRSQALLAVESEQWREVLAQAQRDRLQQIQQSSDWQAAIEDLSGASW 209

Query: 253 GSDLHKNSQNALLRRLPILDAWAQS----------ETHDLHVPSELEEFTQSGLLAKSKK 302
                    +AL  ++  + AW+ +           T+D  +  +L   TQ+G  +    
Sbjct: 210 ------READALSDQIQQILAWSDTLFDPANSNWQATYDEFIKLKL---TQAG--SAKNW 258

Query: 303 GNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAA 362
           G+     L       L + +  +  LL    +    W    +S   + +F+ +L  + A 
Sbjct: 259 GSADTAKLLRTQCKVLRDRLRDEESLLSLRPNEADDWNRDQRS-RIYEAFETVLKSIDAR 317

Query: 363 LDNDE------------QGLLGERIRTLYP----VAMIDEFQDTDPLQYSIFSRLYLDYP 406
              D             + L  E +R+ Y        +DEFQDT+P Q  I   L+ D  
Sbjct: 318 KRQDRCLDFNDLERGAVRALESEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQALW-DPQ 376

Query: 407 QCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAH----YTLGTNWRSSAAMVAAVNQVF 462
              L ++GD KQ+IY FRGA    +   + Q+  H     TL  ++R+   ++  +NQVF
Sbjct: 377 HLILTLVGDEKQSIYGFRGAATQVFRNWQQQIQQHQGHIVTLSQSFRTHQTLLETINQVF 436

Query: 463 SSATHPF--IYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYA 520
                P+  + SD  P  P+                +Q  +    PE+ D   S      
Sbjct: 437 EPVLDPYQPLRSDRQPPHPLP--------------PIQQLVIE--PEEKD---SLEQARI 477

Query: 521 QMAEACAAQIQHILTASA---SGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGI 577
           Q A A A QIQ  +          +  HR   I  GD+A+L R       V   +  Q  
Sbjct: 478 QEATAIAQQIQTWIQQPLLVWDKPSNQHR--PIAYGDIAILCRRRAPLETVYGEVLNQAG 535

Query: 578 ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637
             V ++   S+  + V  D++ LL  +  P ++  L   + S  F L+ ++L        
Sbjct: 536 IPVLVNGGGSLLETPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSDAQLYQRAQQGK 595

Query: 638 EWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQ 697
            W       RQ R   +    + +L  +L  R +        + +R  T Y  +   L Q
Sbjct: 596 GW----WSHRQERPDPAFAAAIKILEGLLRSRFLESPLRLVQQFDR-ATGYSAVLASLPQ 650

Query: 698 ATREIDSDQGLLRFL-TQAMADAAQGLGGSDEQIQRLE--------SERRLVQIVTIHKS 748
           A R +   Q LL FL  Q  A   + L    +Q+Q+ E             V ++T+H S
Sbjct: 651 AQRLLADWQALLTFLREQPQAHDLELLLRYWKQLQQAEVVLPRPVLEAGNAVTLMTLHGS 710

Query: 749 KGLEYPLVFLP-FVMSYRESSEGKYYDAESATTWVDLTGNEEALA------KADQERLAE 801
           KGLE+P+V +P      R  +E   +D E           E+A A      +  Q   AE
Sbjct: 711 KGLEWPVVIIPDLTAKPRSQAETVLFDTELGVALRQPYVKEQAAAYQFFKYRKQQAEDAE 770

Query: 802 DLRLLYVALTRA 813
             RLLYV  TRA
Sbjct: 771 TRRLLYVGFTRA 782