Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 118/497 (23%), Positives = 190/497 (38%), Gaps = 108/497 (21%)

Query: 342 KAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRL 401
           +AK   + L +DDLL   +  + +     L + I   +   ++DE+QDT+ LQ S+   L
Sbjct: 202 EAKQAQNVLDYDDLLLYWAQMVSDAS---LADDIGNRFDYVLVDEYQDTNKLQSSVLLAL 258

Query: 402 YLDYPQCGLLMIGDPKQAIYAFRGA---DIFTYIKARNQVNAHYTLGTNWRSSAAMVAAV 458
             D    GL ++GD  Q+IY+FR A   +I  + K         TL  N+RS+  ++AA 
Sbjct: 259 KPDGR--GLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEIVTLDRNYRSTQPILAAA 316

Query: 459 NQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDY 518
           N V   A   F                  K  W+              E  ++P+  T  
Sbjct: 317 NGVIDLARERF-----------------TKNLWTDR------------ESAERPKLLT-- 345

Query: 519 YAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIA 578
               A+     ++ +L    SG     +         AVL RT + +  +   L+++ I 
Sbjct: 346 VKDEADQANCIVEQVLANRESGMLLKQQ---------AVLFRTSSHSGPLEVELTRRNIP 396

Query: 579 SVYLSNRDSVFASDVAQDIERLLLAVWQPEDE----RLLR-----------------AAV 617
            V       + ++ V +D+  +L     P D     RLL+                 AA 
Sbjct: 397 FVKFGGLKFLDSAHV-KDMLAVLRFAQNPRDRVAGFRLLQMLPGVGPQTAGKILDTIAAD 455

Query: 618 ASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLA 677
              L AL   E+ A      +W  L+   +  R+  S       +  +  + H+ ER   
Sbjct: 456 PEPLMAL--GEVPAPPRSGTDWMSLVELLQALRKPGSAWPTEIEMARMWYEPHL-ERIHE 512

Query: 678 ESEGERWLTDYLHISELLQ-QATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESE 736
           ++E  R   D + + ++     +RE        RFLT+   D       SD+    L  E
Sbjct: 513 DAETRR--ADLVQLEQIAAGYPSRE--------RFLTELTLDPPDAT--SDQAGVPLLDE 560

Query: 737 RRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQ 796
             L+ + TIH +KG E+  VF+  V+     S+                     LA    
Sbjct: 561 DYLI-LSTIHSAKGQEWRSVFMLNVVDGCIPSD---------------------LATGTS 598

Query: 797 ERLAEDLRLLYVALTRA 813
             L E+ RLLYV +TRA
Sbjct: 599 HELEEERRLLYVGMTRA 615



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 15/115 (13%)

Query: 21  GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
           G  LI A AG+GKT T+A     L++    A+ R        +IL++TF+  A AE+  R
Sbjct: 31  GPLLIIAGAGSGKTNTLAHRVAHLIVNG--ADPR--------RILLMTFSRRAAAEMSRR 80

Query: 81  IRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIH 135
           + R       A   G S   +  +L    T H +   LL     Q+   A FTIH
Sbjct: 81  VER-----ICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNAEFTIH 130