Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1224 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  723 bits (1867), Expect = 0.0
 Identities = 492/1253 (39%), Positives = 677/1253 (54%), Gaps = 101/1253 (8%)

Query: 9    AVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVT 68
            ++ LD    P  GARLIEASAGTGKTYTIA LYLRL+LG G        P  V++ILVVT
Sbjct: 4    SMPLDAFTLPFDGARLIEASAGTGKTYTIANLYLRLLLGIG-----QQRPFKVEEILVVT 58

Query: 69   FTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDE 128
            FT AAT+ELRDRIRRR+ D         S+D  L  LL    D  LA+  L  A + +DE
Sbjct: 59   FTNAATSELRDRIRRRIQDGFRLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTLDE 118

Query: 129  AAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEV 188
            AAI+TIHGFCQR+L+  AFES   FE+EF  D+S L +   AD+WR   YPL   +A+ V
Sbjct: 119  AAIYTIHGFCQRVLSDMAFESALLFESEFTLDDSELLSMAAADFWRAHCYPLSADIAAMV 178

Query: 189  RRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIKQHWLVEREEIE 248
            +  + +P AL  E+   L          L   D + L     ARI  ++  W  + E+  
Sbjct: 179  QAKFASPKALEQELKSLLGARDA--VVELQMEDFSKLASGFSARIARLRLAWQRQAEDTL 236

Query: 249  PAVTGSDLHKNSQNALLRRLPIL-DAWAQSETHDLHV----PSELEEFTQSGLLAKSKKG 303
              +    L+  S        P L + W       L      P +  +    G +  +K G
Sbjct: 237  TTLCKLPLNGVSYGKAADGFPKLKNHWDTMTAWSLRCEGTPPEKAMQAVAYGNIKLNKGG 296

Query: 304  ---NPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS 360
                P  L+L  +I+  L    +L    LV A +  +      K+  + ++ DDLL  L+
Sbjct: 297  QLPGPETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLLKHLA 356

Query: 361  AAL-----------------DNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL 403
             AL                 D +    L   + + +P+A+IDEFQDTDPLQ++IFS LY 
Sbjct: 357  KALGVQGSGSGSGFEPASEIDREIALRLSSEVASRFPMALIDEFQDTDPLQFAIFSALYR 416

Query: 404  DYPQC-GLLMIGDPKQAIYAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVF 462
              P+  GLLMIGDPKQAIYAFRG DI TY+ AR    AHY+LGTN+RSS+AMV AVN VF
Sbjct: 417  QQPRAQGLLMIGDPKQAIYAFRGGDIHTYLGARRTAAAHYSLGTNYRSSSAMVQAVNTVF 476

Query: 463  SSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQ-PALTY-WWPEDLDKPQSKTDYYA 520
            S     F+ SD+IPF+PVAAS    K    ++G+ Q PAL      ED DK  +K    A
Sbjct: 477  SVRERVFL-SDEIPFEPVAASDSGAKT-LLIDGKTQGPALQIALLGEDPDKGLNKQTARA 534

Query: 521  QMAEACAAQIQHILTASASGAATF-HRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIAS 579
             MAE  AA I  +L  +  G A    +   + A D+AVLVR  NEA  ++DAL+++ I +
Sbjct: 535  LMAEDAAAHIGQLLCLATEGRAVLADKQRPLLAKDIAVLVRDRNEAAFIKDALTRRNIGA 594

Query: 580  VYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEW 639
            V+LS RD+VFA+  A ++  +L A+ QP DE+ LRAA+A+ L   + SE+ A N DE   
Sbjct: 595  VFLS-RDNVFATKEASELLHVLAALAQPRDEKRLRAAMATRLMGWSLSEIAAFNQDEEAR 653

Query: 640  EQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQAT 699
             Q +  F ++ + W ++GV+P L A      + ER   + E +R LTD+ H+ ELL+QA 
Sbjct: 654  RQALECFERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTDFRHLCELLEQAG 713

Query: 700  REIDSDQGLLRFLTQAMADAAQGLGGSDEQIQ-RLESERRLVQIVTIHKSKGLEYPLVFL 758
              +D    LL +  QA+ D      GSDE +Q RLESE+ LVQIVTIHKSKGLEY L ++
Sbjct: 714  ASLDGISALLGWFEQALLDP-----GSDEAMQLRLESEQNLVQIVTIHKSKGLEYGLCYI 768

Query: 759  PFVMSYRESSEGK----YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAV 814
            PF +S    S GK     Y  +    W DL   +E +   D ERL EDLRLLYVALTR V
Sbjct: 769  PF-LSLARDSRGKPSPLLYHKDDRLVW-DLLQTDEGVECYDAERLGEDLRLLYVALTRPV 826

Query: 815  YGCFIGIA----PLRNGNSSQEPTSAHRSAMGFLLQ-DGQEGGIADLQQALLK------- 862
            YGC +G+A     L+ G SS+     +++A+GFLL  D ++  I  L+QA  +       
Sbjct: 827  YGCRLGLANHSRMLKAGISSE----VYKTALGFLLGIDSKDCDINVLRQAAERVSSHAHG 882

Query: 863  -QCENLPDVVQ---CPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQ- 917
             +   + D++Q           ++ +PP       + R+ ++  +  WRV SYS L+ Q 
Sbjct: 883  SEIIGVVDIIQHDLTVLESAQHESTEPP-------SPRKPNRIGEESWRVGSYSALIAQG 935

Query: 918  SSHARHD-----PLQELPLLEVGG--------FDLDSAQERDGAALESVERSIFNFPRGA 964
            + H  H        +E     + G         +L    E + A+ ++   S F+FPRGA
Sbjct: 936  AGHTEHPGDIARTHEETTAAAIPGAGDESFSVLELPLPDEPEPASQDTGALSRFSFPRGA 995

Query: 965  RPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPLDGK 1024
              G+F+H + E + F   A + P  +++ + M    I+++W PVL      ++  PL  +
Sbjct: 996  NAGSFMHQVLELIRFDAVAETLP--EVLPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDE 1053

Query: 1025 --ALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKG 1082
                 L  +  AQ L E+EF LP+  L    L  +      L  +  D GF  + GMLKG
Sbjct: 1054 KGQFALGDLSPAQLLVEMEFYLPVSRLKPGALGDLL----ALYGYRSDFGFDTLNGMLKG 1109

Query: 1083 FIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRS 1142
            FIDL F + GR+Y+ D+KSNHLGD    YH   + +A+ +H YDLQY +Y LALHR LRS
Sbjct: 1110 FIDLCFSHDGRFYIADYKSNHLGDTLDHYHRDAMHTAIQDHHYDLQYLLYTLALHRLLRS 1169

Query: 1143 RLAHYNYEQHFGGVFYLFLRGMDGRG-DQGVFHTKPSLALLDELDGLIAGREL 1194
            RLA Y+Y++  GG FYLFLRGM       GV+  KP   L+  LD L  G+E+
Sbjct: 1170 RLAQYDYDKDVGGCFYLFLRGMSASSPGTGVYFDKPPKLLIQALDALFEGKEI 1222