Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1187 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 82.4 bits (202), Expect = 2e-19
 Identities = 126/492 (25%), Positives = 194/492 (39%), Gaps = 66/492 (13%)

Query: 383 MIDEFQDTDPLQYSIFSRLYLDY-----------PQCGLLMIGDPKQAIYAFRGADIFTY 431
           ++DE QDT P Q++I S L  ++           P+  +  +GD KQ+IY F+GAD   +
Sbjct: 428 LVDEAQDTSPDQWAIASALAGEFFTDSARWDGTRPRT-VFAVGDRKQSIYGFQGADPKAF 486

Query: 432 IKAR-------NQVNAHYT---LGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481
              R       + +  H+    L  ++RS+ A++ AVN VF  A  P    D +      
Sbjct: 487 EDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVF--ARQP--ARDGVAQDDAD 542

Query: 482 ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQ----------IQ 531
           +    D  H +        L   WP     P+   D +    E    +           Q
Sbjct: 543 SGVAEDITHHAFRKDA-GGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVAQ 601

Query: 532 HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFAS 591
            I T ++ G     +G  I  GD+ VLVR         + +S    A V ++  D +  +
Sbjct: 602 RIKTMTSGGELLESQGRPIRPGDILVLVR--RRGGFEEELVSALKSAKVEVAGVDRMTLT 659

Query: 592 D--VAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQY 649
           D     D+  L  A+  PED+  L + +   L  L    L  L  D    E+L    R +
Sbjct: 660 DQLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDRLRPH 719

Query: 650 RRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTD------YLHISELLQQATREID 703
               +E      +  +   R  A R LA  E    + D       L +  L  +A   ID
Sbjct: 720 --AGAENAYGKAMEIIEPLRDRAGR-LAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDPID 776

Query: 704 SDQGLLRFLTQAMADAAQG----LGGSDEQIQRLESERRL--VQIVTIHKSKGLEYPLVF 757
               L     +    A QG    L     +I+R   +  L  V+I+T+H SKGL+ P+VF
Sbjct: 777 EFLALTLAHERVGPPALQGFLSWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPVVF 836

Query: 758 LPFVMSYRESSEGKYYDAESATT-----WVDLTGNEEALAKA-----DQERLAEDLRLLY 807
           LP  ++    ++   + A+         W     +  A  +A       ER  E  RLLY
Sbjct: 837 LPDTLAKPTGNDLLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLY 896

Query: 808 VALTRAVYGCFI 819
           VA+TRA    +I
Sbjct: 897 VAMTRAADRLYI 908



 Score = 50.1 bits (118), Expect = 1e-09
 Identities = 60/195 (30%), Positives = 85/195 (43%), Gaps = 32/195 (16%)

Query: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84
           + ASAGTGKT  +    LRL+L  G    R         +L +TFT+AA AE+ +R+   
Sbjct: 36  VAASAGTGKTKVLTDRVLRLLLA-GTPPQR---------LLCLTFTKAAAAEMANRV--- 82

Query: 85  LHDARLAFARGASDDPL---LRSLLAEFTDHNLAVSLLLSAERQMDEAA--------IFT 133
              A LA      ++ L   L SLL    +   A+  L    R++            I T
Sbjct: 83  --SAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQT 140

Query: 134 IHGFCQRMLTQNAFESGSRFENEFVTD-ESRLKAQVVADYWRRQFYPLPISLASEVRRLW 192
           IHGFCQ +L +   E+G     E + D E++   Q   D   R         A +     
Sbjct: 141 IHGFCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVLR-----AARQAEDGEGGD 195

Query: 193 PAPSALLAEIAGYLS 207
           PA +A LA + G+LS
Sbjct: 196 PALAAALAVVTGHLS 210