Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., ATP-dependent helicase from Rhodopseudomonas palustris CGA009

 Score = 66.2 bits (160), Expect = 9e-15
 Identities = 126/493 (25%), Positives = 190/493 (38%), Gaps = 100/493 (20%)

Query: 342 KAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRL 401
           +AK  H+ L +DDLL   +  +   E+    E I + +   ++DE+QDT+ LQ  +   L
Sbjct: 200 EAKQRHNVLDYDDLLLYWAQVM---EEPAFAEEIGSRFDHVLVDEYQDTNALQARVL--L 254

Query: 402 YLDYPQCGLLMIGDPKQAIYAFRGA---DIFTYIKARNQVNAHYTLGTNWRSSAAMVAAV 458
            L     GL ++GD  QAIY+FR A   +I  + KA +      TL  N+RS+ A+++A 
Sbjct: 255 ALKPNGVGLTVVGDDAQAIYSFRAATVRNILDFPKAFDPPARVVTLDRNYRSTQAILSAA 314

Query: 459 NQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDY 518
           N V   A   F                  K  W+        L       L   + +TD 
Sbjct: 315 NGVIDLARERF-----------------TKNLWTDRADGARPL-------LVSVRDETDQ 350

Query: 519 YAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIA 578
              +       ++ +L A   G         +     AVL RT + +  +   L+++ I 
Sbjct: 351 ARYI-------VERVLDAREGG---------VTLKQQAVLFRTSSHSAPLELELTRRNIP 394

Query: 579 SVYLSNRDSVFASDVAQDIERLLLAVWQPEDE------RLLRAAVASNLFALTASELDAL 632
            V       + A+ V +D+  LL  V  P D        LL   V     A     LD +
Sbjct: 395 FVKFGGLKFLDAAHV-KDMLALLRFVQNPRDRVAGFRVMLLMQGVGP---ASAQKALDTM 450

Query: 633 NNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYL-HI 691
               +    L A     R     RG    + AV   R     W AE   ER L  Y  H+
Sbjct: 451 TAAADPLGALTALPAPPRAGADWRG---FVAAVQELRSGDAGWPAEI--ERALIWYAPHL 505

Query: 692 SELLQQA-TREIDSDQ---------GLLRFLTQAMADAAQGLGGSDEQ-IQRLESERRLV 740
             + + A TR+ D  Q            RFLT+   D       SD+  +  L+ +  ++
Sbjct: 506 DRIHEDAETRKADLVQLAQIASGYPSRERFLTELTLDPPDAT--SDQAGVPTLDDDYLIL 563

Query: 741 QIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLA 800
              TIH +KG E+  VF+  V+     S+                     L       + 
Sbjct: 564 S--TIHSAKGQEWKQVFVLNVVDGCMPSD---------------------LGTGTSAEIE 600

Query: 801 EDLRLLYVALTRA 813
           E+ RLLYVA+TRA
Sbjct: 601 EERRLLYVAMTRA 613



 Score = 34.3 bits (77), Expect = 4e-05
 Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83
           L+ A AG+GKT T+A     LV+G        A P    +IL++TF+  A AE+  R+ R
Sbjct: 32  LVIAGAGSGKTNTLAHRVAHLVVG-------GADPY---RILLMTFSRRAAAEMTRRVER 81

Query: 84  RLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIH 135
               AR      AS   L   L    T H +   LL     ++     FTIH
Sbjct: 82  ---IARKVLGDRAS--ALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIH 128