Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score =  744 bits (1921), Expect = 0.0
 Identities = 506/1231 (41%), Positives = 688/1231 (55%), Gaps = 87/1231 (7%)

Query: 11   TLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFT 70
            TLD L  PL G RLIEASAGTGKTYTIAGLY+RL+LG    +++ A PLS +QILVVTFT
Sbjct: 5    TLDPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLG----DSQRA-PLSCEQILVVTFT 59

Query: 71   EAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDH--NLAVSLLLSAERQMDE 128
             AAT ELRDRIR+++  A  AF     DDPL+ +L +E      + A+  L  A + +DE
Sbjct: 60   NAATQELRDRIRKKIQLAYRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDE 119

Query: 129  AAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEV 188
            AAIFTIHGFCQR+L+  AFES   FE+EF  D+S      V D+WR   YPLP  LA  +
Sbjct: 120  AAIFTIHGFCQRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLPGYLAQII 179

Query: 189  RRLWPAPSALLAEIAGYLSGPPVKLT-TPLMEGDLAALQQAQIARICEIKQHWLVERE-- 245
               +  P  L  ++   L      ++ TP     +A      ++R+  I   W  ER+  
Sbjct: 180  SNKFSDPDGLTKQLRPLLGANQASVSPTPEAFSQVAERLSQSLSRLRLI---WPRERDAT 236

Query: 246  -EIEPAV--TGSDLHKNSQN--ALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLA-- 298
             E+  A+   G+   K  Q    L      +D WA         P  L +    G LA  
Sbjct: 237  LELLKALPLNGTRFGKKDQGYPKLETLFAAMDNWAAQ-------PLSLPDNKVLGALALG 289

Query: 299  --KSKKGN----PPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSF 352
              K  KG     P Q  L   IE       +L    L  A    +   A  K   +  + 
Sbjct: 290  GLKLNKGGESPTPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKARFAAQKQLKNLRTP 349

Query: 353  DDLLTQLSAAL--DNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYP---- 406
            DDLL  L+ AL  + D++  L   I   +P+A+IDEFQDTDPLQY IFS +Y        
Sbjct: 350  DDLLIALADALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVSTD 409

Query: 407  -QCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSA 465
               GLLMIGDPKQAIYAFRGADI TYI AR Q   HY+L TN+RSS AM+ AVNQ+FS +
Sbjct: 410  SDLGLLMIGDPKQAIYAFRGADIHTYIHARGQTENHYSLDTNYRSSQAMIEAVNQLFSRS 469

Query: 466  THPFIYSDDIPFQPVAASP-GADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAE 524
              PFI S  IPF+ V ASP  A+KR      Q          ED +   +K    +Q+AE
Sbjct: 470  DDPFI-SQAIPFELVKASPEAAEKRLVEKVPQTSALRLKLLGEDPNAGLNKASARSQLAE 528

Query: 525  ACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSN 584
              A +I  +L  +  G     + + ++A D+AVLVR  NEA  ++ ALS +GI +V+LS 
Sbjct: 529  DAANEIARLLNEAQRGEC-LKQDKPLKAKDIAVLVRDRNEAAYIKTALSSRGIGAVFLS- 586

Query: 585  RDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIA 644
            RDSVF + VA+++  +LLA+  P+DER LR+A+A+ L    A  +   N DE+  +Q + 
Sbjct: 587  RDSVFDTLVAKELALVLLAIANPKDERALRSAMATALLGYDAQAIHGFNLDEDVRQQQLE 646

Query: 645  EFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDS 704
             F    + W +RG++P + A+     + ER L   EG+R LTD+ H+ ELLQQ   E+D 
Sbjct: 647  AFDNLHQTWLKRGIMPCMMALAADTRLIERLLTADEGQRRLTDFRHLGELLQQKAMELDG 706

Query: 705  DQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSY 764
               LL +  Q + + +     ++E   RLESE+ LVQIVTIHKSKGLEYP+ FLPFV   
Sbjct: 707  ISALLNWYQQTLIEVSS----TEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLA 762

Query: 765  RESSEGK---YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGI 821
            R+S        Y  + A  W D+  +EE  AK   E LAEDLRLLYVALTR V  C+  +
Sbjct: 763  RDSRRKPAPMLYHEQDALVW-DIDQSEEGWAKYKAENLAEDLRLLYVALTRPVLACYCYV 821

Query: 822  A-----PLRNGNSSQEPTSAHRSAMGFLLQ-DGQEGGIADLQ---QALLKQCENLPDVVQ 872
            A       R+G SSQ       +A+G+LL  +      AD+Q   QAL  +  ++ D+V+
Sbjct: 822  ANHSRFTKRDGISSQ----LFETAIGYLLGIETNACEFADIQAAAQALASEAISV-DLVE 876

Query: 873  CPPPKRFEQAYQP-PQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931
               PK     + P    D  +L  R L++  +  WRV SYSGLV  S+H +  P      
Sbjct: 877  SDAPKL---DFDPIDTADAVKLAPRPLNRRHEIPWRVGSYSGLVKHSAHEQISP------ 927

Query: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991
                G   ++  E +  A +S + S F+F RGA  G+FLH + E++DF  +  S  +   
Sbjct: 928  ----GMGDEAFPELEQLAPDSEQLSRFSFERGANAGSFLHWVLEQIDFTLADTSLGDE-- 981

Query: 992  ILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051
            + + ME   I+SEW  +L      +L TPLDG  LRL  +  AQ+L E+EF +PI  LDA
Sbjct: 982  LPKAMERFGIDSEWQDMLHAWYLDLLHTPLDGDGLRLASLSQAQKLVEMEFYMPIGKLDA 1041

Query: 1052 PTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAY 1111
            P LN++  ++     ++  L F  ++GMLKGFIDL F+YQG++Y+ D+KSNHLGD  + Y
Sbjct: 1042 PGLNQLLSQY----GYSAALNFETLEGMLKGFIDLTFEYQGKFYIADYKSNHLGDHLSHY 1097

Query: 1112 HPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRG-DQ 1170
                +  A+A H YDLQY IY+LALHR+L+ RL  Y Y+QH GG +YLFLRGM       
Sbjct: 1098 EKPAMLRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYDQHVGGCYYLFLRGMSADSPST 1157

Query: 1171 GVFHTKPSLALLDELDGLIAGRELAQRASKA 1201
            GV++ KP LAL+  LD L++  E ++  +++
Sbjct: 1158 GVYYDKPPLALIQALDTLLSEAEASESQAES 1188