Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1094 a.a., Probable exonuclease V (beta chain) RecB (exodeoxyribonuclease V beta chain)(exodeoxyribonuclease V polypeptide) (chi-specific endonuclease) from Mycobacterium tuberculosis H37Rv

 Score =  294 bits (752), Expect = 3e-83
 Identities = 290/918 (31%), Positives = 414/918 (45%), Gaps = 140/918 (15%)

Query: 352  FDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLL 411
            F+DLL +L+ AL+  +     +R+R  + + ++DEFQDTDP+Q+ +  R +  +    L+
Sbjct: 230  FNDLLIRLATALEAADSPAR-DRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHS--ALI 286

Query: 412  MIGDPKQAIYAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIY 471
            +IGDPKQAIY FRG DI TY+KA    +A YTLG NWRS  A+V ++  V   AT   + 
Sbjct: 287  LIGDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDAT---LG 343

Query: 472  SDDIPFQPVAASPGADKRHWS--LEGQVQPALTYWWPEDLDKPQSKTDYYAQMA----EA 525
              DI  +      G D  H    L    +PA     P  L   +  T  Y   A    EA
Sbjct: 344  HADIVVR------GTDAHHAGHRLASAPRPA-----PFRLRVVKRHTLGYDGTAHVPIEA 392

Query: 526  CAAQIQHILTASASG----AATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVY 581
                I   L A  +      ATF  G  + A D+AV+V    +AR  R+AL++ GI ++Y
Sbjct: 393  LRRHIPDDLAADVAALLASGATF-AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIY 451

Query: 582  LSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQ 641
              + D VFAS  A+D   LL A   P+   L+RAA  +  F  TA  L A    +   ++
Sbjct: 452  TGDTD-VFASQAAKDWLCLLEAFDAPQRSGLVRAAACTMFFGETAESLAA--EGDALTDR 508

Query: 642  LIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQAT-R 700
            +    R++      RGV  + +A      +  R L++  GER LTD  HI++LL +A  R
Sbjct: 509  VAGTLREWADHARHRGVAAVFQAAQLAG-MGRRVLSQRGGERDLTDLAHIAQLLHEAAHR 567

Query: 701  EIDSDQGLLRFLT-QAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLP 759
            E     GL  +L  QA A A     G  E  +RL+S+   VQI+T+  +KGL++P+V+LP
Sbjct: 568  ERLGLPGLRDWLRRQAKAGA-----GPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLP 622

Query: 760  FVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLA------EDLRLLYVALTRA 813
            F  +    S+      +  T  + + G +    +   E L       ++LRL YVALTRA
Sbjct: 623  FAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRA 682

Query: 814  VYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALLKQCENLPDVVQC 873
                    AP                       D   GG++ L +        +PD  +C
Sbjct: 683  QSQVVAWWAPTF---------------------DEVNGGLSRLLRGRRPGQSQVPD--RC 719

Query: 874  PPPKRFEQAYQP---------PQLDERELTARE---------------LSQAIDRRWRVT 909
             P    EQA+           P ++E  + AR                  + ID  WR T
Sbjct: 720  TPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRT 779

Query: 910  SYSGLV-------MQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPR 962
            SYS LV       + S  A      E+ +  V       A    GA L S   ++   P 
Sbjct: 780  SYSDLVRGSEAVTVTSEPAAGGRADEVEIAVV-------AAPGSGADLTSPLAAL---PS 829

Query: 963  GARPGTFLHSLFEEVDFQQ---SAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLST 1019
            GA  G+ +H++ E  D      +A  E   +        +   ++  P L + +  +  T
Sbjct: 830  GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889

Query: 1020 PLD--GKALRLQQIMAAQRLTELEFLLPIEVLDA---------PTLNRITQRH----DPL 1064
            PL     AL L+QI    RL EL+F +P+   D            +  +   H    DPL
Sbjct: 890  PLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPL 949

Query: 1065 SAHA-----GDLGFHAVQGMLKGFIDLVFQYQG-RYYVLDWKSNHLGDDPAAYHPQRLGS 1118
            S +A       LG   ++G L G ID+V +  G RY V+D+K+NHLGD  A Y  +RL  
Sbjct: 950  SPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTE 1009

Query: 1119 AMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRG-------DQG 1171
            AM    Y LQ  +Y + LHRFLR R   Y   +H GGV YLF+RGM G           G
Sbjct: 1010 AMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAG 1069

Query: 1172 VFHTKPSLALLDELDGLI 1189
            VF   P  AL+  L  L+
Sbjct: 1070 VFTWNPPTALVVALSDLL 1087



 Score = 62.0 bits (149), Expect = 3e-13
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83
           ++EASAGTGKT+ +AGL  R +     AET      ++D++L++TF  AA+ ELR+R+R 
Sbjct: 18  VLEASAGTGKTFALAGLVTRYL-----AET----AATLDEMLLITFNRAASRELRERVRG 68

Query: 84  RLHDARLAFARGASDDPLLRSLLAEFTDHNLAV--SLLLSAERQMDEAAIFTIHGFCQRM 141
           ++ +A  A    A     L   L   +D   A   S L  A    D A I T H FC  +
Sbjct: 69  QIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSV 128

Query: 142 LTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQF 177
           L        +  + E     + L  ++V D +   F
Sbjct: 129 LKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANF 164