Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., DNA helicase, ATP-dependent, RepA type from Marinobacter adhaerens HP15

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 121/518 (23%), Positives = 205/518 (39%), Gaps = 110/518 (21%)

Query: 350 LSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCG 409
           + FDDL+        ++   L   R +  Y   ++DE+QDT+  QY +  +L  +  +  
Sbjct: 183 VDFDDLILLPVMLFRSNPDVLAKWRRKIRY--MLVDEYQDTNVCQYELVKQLVAE--RAA 238

Query: 410 LLMIGDPKQAIYAFRGA--DIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATH 467
             ++GD  Q+IYA+RGA  +    +K          L  N+RS+A ++ + N V ++  H
Sbjct: 239 FTVVGDDDQSIYAWRGARPENLAQLKEDFPSLKIVKLEQNYRSTARILRSANTVIANNPH 298

Query: 468 PFIYSDDIPFQPVAASPGADKRHWS--LEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEA 525
            F                 +K  WS    G+ +  +     ED +  +  T+   Q  + 
Sbjct: 299 VF-----------------EKALWSDHTIGE-EIRIVRCRNEDAETDRVATEILDQKLK- 339

Query: 526 CAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNR 585
                                 + ++  D AVL R  ++AR++   L    I    +S  
Sbjct: 340 ----------------------KGLDFRDFAVLYRGNHQARLLEMKLQAYQI-PYRISGG 376

Query: 586 DSVFASDVAQDIERLLLAVWQPED--------------------ERLLRAAVASNLFALT 625
            S F+ +  +D    L  +  P+D                    E+L   A + N+    
Sbjct: 377 QSFFSKNEIKDAMSYLRLLINPDDDAAFLRVVNVPRREIGPRTLEQLSHYARSRNVSLFK 436

Query: 626 ASELDALNNDENEWEQLIAEFRQY--------RRLWSERGVLPMLRAVLTQRHIAERWLA 677
           A  L  +  + +  E+ +   R++         RL SE  + P+++ + T     E WL 
Sbjct: 437 A--LGDMGAETHVTEKGLDRLRRFAHWVDATCERLHSENPI-PVIKQLFTDIEY-EEWLH 492

Query: 678 ESEG-----ERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQR 732
           +  G     ER + +  ++ E +Q   R +D  +G    L   + DA   L   D   QR
Sbjct: 493 QHSGTPKQAERRMENIWYLVESIQ---RMLDDGKGTADEL--GIEDAITKLILRDMMEQR 547

Query: 733 LE-SERRLVQIVTIHKSKGLEYPLVFL----PFVMSYRESSEGKYYDAESATTWVDLTGN 787
            E  +   VQ++T+H SKGLE+P VF+      ++ +R S E    + E    +V +T  
Sbjct: 548 EEDDDSDKVQLLTLHASKGLEFPHVFIMGLEEEILPHRSSIEEGNIEEERRLMYVGIT-- 605

Query: 788 EEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLR 825
                     R  E L L Y A TR  YG  +   P R
Sbjct: 606 ----------RARETLTLTYAA-TRKQYGEKLETIPSR 632



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 22/99 (22%)

Query: 21  GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
           G  L+ A AG+GKT  I      L+   G    RH        I  VTFT  A  E+++R
Sbjct: 17  GPMLVLAGAGSGKTSVITRKIAYLIEQLG-IPGRH--------IAAVTFTNKAAREMKER 67

Query: 81  IRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLL 119
           + R +            D  L R L+   T HNL ++++
Sbjct: 68  VGRIV------------DRKLTRGLIVS-TFHNLGLNMI 93