Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., ATP-dependent DNA helicase Rep (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.2 bits (160), Expect = 8e-15
 Identities = 121/524 (23%), Positives = 198/524 (37%), Gaps = 142/524 (27%)

Query: 341 AKAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSR 400
           A+    ++ L FDDL+   +  L + E+  +  R +T     ++DE+QDT+  QY +   
Sbjct: 172 AQHMKAYNALDFDDLILLPTLLLRHHEE--VRTRWQTKIQYLLVDEYQDTNTSQYEMVKL 229

Query: 401 LYLDYPQCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAH--------YTLGTNWRSSA 452
           L  +  +    ++GD  Q+IY++RGA      K +N V             L  N+RSS 
Sbjct: 230 LVGE--RARFTVVGDDDQSIYSWRGA------KPQNLVLLGKDFPKLKLIKLEQNYRSSQ 281

Query: 453 AMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP 512
            ++ A N +   A +P +Y               DK  +S        L Y  P      
Sbjct: 282 RILRAANILI--ANNPHVY---------------DKSLFS-------ELAYGEP------ 311

Query: 513 QSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDAL 572
             +  + A   +     +  I+     G   F        GD A+L R  +++R++  AL
Sbjct: 312 -MRVLFAANEEQEAERVVAEIVRHKFVGRTQF--------GDYAILYRGNHQSRLLERAL 362

Query: 573 SQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDAL 632
               I    LS   S F+    +DI   L  V  P+D+      V      +  S L+ L
Sbjct: 363 MTNRI-PYKLSGGTSFFSRAEIKDIMGYLKLVVNPDDDNAFLRVVNLPKRGIGPSTLERL 421

Query: 633 NNDENE-----WEQLIA-------------EFRQYRRLWSERG-----------VLPMLR 663
            N  NE     +E + A                Q+ R   + G           V  ++R
Sbjct: 422 GNFANEKHISMFEAIFAPELNHHLPPNAMSALYQFGRFIVDTGEHADRGEPVEAVKQLIR 481

Query: 664 AVLTQRHIAE----------RWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLT 713
            +  + ++ E          R    SE  RW+T+ L   EL +  T     ++  LR + 
Sbjct: 482 KINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELEEPMTLPEVVNRLTLRDMM 541

Query: 714 QAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYY 773
           +  ++      G D+           VQ++T+H SKGLE+P VF                
Sbjct: 542 ERNSEDE----GGDQ-----------VQLMTLHASKGLEFPFVF---------------- 570

Query: 774 DAESATTWVDLTGNEEAL----AKADQERLAEDLRLLYVALTRA 813
                     + G EE +       D++ + E+ RL YV +TRA
Sbjct: 571 ----------MVGVEERILPHQTSIDEDNVDEERRLAYVGITRA 604