Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1259 a.a., exodeoxyribonuclease V, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  689 bits (1779), Expect = 0.0
 Identities = 484/1255 (38%), Positives = 673/1255 (53%), Gaps = 98/1255 (7%)

Query: 9    AVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVT 68
            A+ LD L  P  G+RLIEASAGTGKTYTI+GLYLRL+LG G +E     PLS +QILVVT
Sbjct: 9    ALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSE-----PLSCEQILVVT 63

Query: 69   FTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLS--AERQM 126
            FT AAT ELRDRIRRR+  A   F     +DP +++L  +  +   A++L     A + +
Sbjct: 64   FTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPESERAIALRRFDLALKSL 123

Query: 127  DEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLAS 186
            DEAAIFTIHGFCQR+L   AFES   FE++F  D+S      V D+WR   YPLP  LA 
Sbjct: 124  DEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLAQ 183

Query: 187  EVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIKQHWLVEREE 246
             +   +  P  L+ ++   L     K   P+     A L ++    +   K  W   R+ 
Sbjct: 184  IIASEFGDPDGLVKQLRALLGASEAKPLKPVQP--FARLAESLSQSVQRFKLAWPRGRDA 241

Query: 247  I-----EPAVTGSDLHKNSQN--ALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAK 299
            +        + G    K S N   L      LD +  +  H L     LE  + S L   
Sbjct: 242  LLALLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFI-AFGHGLPPLKVLEALSLSELKL- 299

Query: 300  SKKGNPPQLA---LFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLL 356
            +K G  P ++   L + +E       ++K   L  A        AK K   + L+ DDLL
Sbjct: 300  NKGGVLPSVSEAPLLDHMEQLATLINAIKPAFLFSAKQGISERFAKQKQLKNVLTPDDLL 359

Query: 357  TQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDY----------- 405
            T L+AA+  +    L + + + +PVA+IDEFQDTDPLQ++IFS +Y              
Sbjct: 360  TTLAAAMLANPD-TLPKAVASRFPVALIDEFQDTDPLQFAIFSWIYQTRLGVKAQNSTAV 418

Query: 406  -------PQCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAV 458
                    +  LLMIGDPKQAIYAFRGADI+TYI+AR Q  AHY L TN+RSS  +VA V
Sbjct: 419  EPKARTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVAGV 478

Query: 459  NQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDY 518
            N +F+   +PFI S  IPF  V     A  +          AL      + +   +K   
Sbjct: 479  NHLFAQHPNPFI-SQSIPFDRVKTPASAAAKQLVESTANSAALRLKLLREGETGLNKASA 537

Query: 519  YAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIA 578
               +AE  AA+I  +LT +A+G     +G  I A D+A+LVR  NEA +++ ALS++ I 
Sbjct: 538  RQTLAEDTAAEITRLLTEAANGQCHTPKGPLI-AKDIAILVRDRNEAAVMKTALSKRQIG 596

Query: 579  SVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENE 638
            +V+LS RDSVF +  A+++  +L A+  P+DER LR+A+A+ L   +A ++ A N DE +
Sbjct: 597  AVFLS-RDSVFDTVEAREMALILRALASPKDERALRSALATALLGYSAEQIHAFNQDEEQ 655

Query: 639  WEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAE-----------------SEG 681
             + L+ +F    ++W +RG++P L ++    H+  R L                   S G
Sbjct: 656  RQMLLEQFFALHQIWQKRGIMPALLSLANATHMVARLLQTPSVTATADQDSEEPDEASNG 715

Query: 682  ERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQ 741
            ER LTD+ H++ELLQQ   EID    LL +  Q + D      G+DEQ  RLESE+ LVQ
Sbjct: 716  ERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDNT----GTDEQQLRLESEQNLVQ 771

Query: 742  IVTIHKSKGLEYPLVFLPFVMSYRESSEGK----YY--DAESATTWV-DLTGNEEALAKA 794
            IVTIHKSKGLEYP+ F+PFV   R++        Y+  DA+ A   V D+ G +E   +A
Sbjct: 772  IVTIHKSKGLEYPVCFIPFVSLARDNRRRPTPMLYHRTDADGAQELVWDIEGTDEGWEQA 831

Query: 795  DQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEG--- 851
             QE LAEDLRLLYVALTR VY C++ IA       +   +  H +A+G+LL     G   
Sbjct: 832  KQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGIKSQLHETAIGYLLGVTDAGCDF 891

Query: 852  -GIADLQQALLKQCENLPDV--VQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRV 908
              +    QALL   E+      V+C      +      +     L AR +++     WRV
Sbjct: 892  ARLHSAAQALLNGVESNAQAISVECVADNIADNKLHTGETQSHTLNARNVTRQYRTPWRV 951

Query: 909  TSYSGLVMQSSHARHDPLQELPLLEVGGFD----LDSAQERDGAALESVER-SIFNFPRG 963
             SYSGLV  + HA+  P  +  +  V G +    L  +  +D A +  +   + F+F RG
Sbjct: 952  GSYSGLVKNAPHAKASPGADDEVSAVFGAEPANSLSESSWQDSADVPQLPLLNRFSFERG 1011

Query: 964  ARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPL-- 1021
            A  G+F+H + E +DF Q+    P    + + M    I  EW  VLQ     +L  PL  
Sbjct: 1012 ANAGSFMHLVLELIDFTQAKIDLPRE--LPKAMLQYGIAPEWQTVLQDWYMEILQAPLAL 1069

Query: 1022 ---DGKALRLQQIMAA----QRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFH 1074
               D + +  +  +AA      L E+EF LP+  L    LN++  +    +A    L F 
Sbjct: 1070 MAQDNQLINPELCLAALVPQHTLVEMEFYLPLNRLKDAELNQLLGQFGYDTA----LHFD 1125

Query: 1075 AVQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYAL 1134
             +QGMLKGFIDL F+YQG++Y+ D+KSNHLGD   AYH   L  A+++HRYDLQY +Y+L
Sbjct: 1126 ELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDTIQAYHYGALKQAISDHRYDLQYILYSL 1185

Query: 1135 ALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGR-GDQGVFHTKPSLALLDELDGL 1188
            ALHR+L  RL +Y+Y+ H GG +YLFLRGM  +    GV++ KP  AL+  LD L
Sbjct: 1186 ALHRYLAMRLPNYDYDIHIGGCYYLFLRGMSVQYPGFGVYYDKPPKALILALDAL 1240