Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1180 a.a., RecBCD enzyme subunit RecB from Enterobacter sp. TBS_079

 Score =  990 bits (2559), Expect = 0.0
 Identities = 568/1196 (47%), Positives = 755/1196 (63%), Gaps = 41/1196 (3%)

Query: 9    AVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVT 68
            A  L+ LR PL G RLIEASAGTGKT+TIA LYLRL+LG G        PLSV+++LVVT
Sbjct: 5    AEPLNPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GNAAFPRPLSVEELLVVT 63

Query: 69   FTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDE 128
            FTEAATAELR RIR  +H+ R+A  R  +D+PL  SLL E  D   A   LL AERQMDE
Sbjct: 64   FTEAATAELRGRIRANIHELRIACLRQTTDNPLYASLLEEIADKQQAAQWLLLAERQMDE 123

Query: 129  AAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEV 188
            A++FTIHGFCQRML+ NAFESG  FE + + DES L+ Q  AD+WRR  YPL   +A  V
Sbjct: 124  ASVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESVLRYQACADFWRRHCYPLSRDIAEAV 183

Query: 189  RRLWPAPSALLAEIAGYLSGP-PVKLTTPLMEGDLAALQQAQIARICEIKQHWLVEREEI 247
              LW  P  LL  I  YL G  PV  + P  +  LA+  +  + +I  +KQ W     EI
Sbjct: 184  HALWKGPEELLRAIDRYLQGEAPVIKSPPPADETLASRHEKIVGKIAALKQKWNESVGEI 243

Query: 248  EPAV--TGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKK-GN 304
            E  +  +G D  K ++    + +  + AWAQ ET    +P  LE+F+Q  L+ ++K  G 
Sbjct: 244  EAIIENSGIDRRKFNRGNQGKWIEKISAWAQEETRGYQLPDALEKFSQRFLIERTKADGI 303

Query: 305  PPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAALD 364
             P+  LF  IE+ LAEP++L   ++  A+   R  +++ K     L FDD+L++L AAL 
Sbjct: 304  VPEHPLFVAIESLLAEPLTLNDLMITRAMTEIREAVSREKRRRGELGFDDMLSRLDAALC 363

Query: 365  NDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAFR 424
            ++    L   IRT +PVAMIDEFQDTDP QY IF R++   P   LL+IGDPKQAIYAFR
Sbjct: 364  SENGEALACAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRQQPDTALLLIGDPKQAIYAFR 423

Query: 425  GADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAASP 484
            GADIFTY+KAR++V AHYTL TNWRSS  MV +VN +FS     F++  +IPFQPV  + 
Sbjct: 424  GADIFTYMKARSEVEAHYTLDTNWRSSPGMVQSVNALFSRMDTAFMFR-EIPFQPVKFAA 482

Query: 485  GADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGAATF 544
                  +   G  QPA+ +W  +   +     DY   MA+ CAAQI+  L+A A G A  
Sbjct: 483  KNRSLRFEFNGVTQPAMNFWLLD--GEGCGVADYQNAMAQHCAAQIRDWLSAGAHGEALL 540

Query: 545  ---HRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERLL 601
               +    ++A D+ VLVR+  EA ++RDAL+   I SVYLSNRDSVF +  AQ++  LL
Sbjct: 541  WKENESAPVKASDITVLVRSRQEASLIRDALTLLNIPSVYLSNRDSVFETLEAQEMLWLL 600

Query: 602  LAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLPM 661
             AV  PE E  LR+A+AS +  L A ++DALNNDE  W+ ++ EF  YR  W +RGV+ M
Sbjct: 601  QAVLSPERESTLRSALASAMLGLNARDIDALNNDEAAWDAVVEEFVHYRERWQKRGVMAM 660

Query: 662  LRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQ 721
            +R ++ +RH+AE  LA + GER LTD LHISELLQ+A  +++S+  L+R+L Q +AD   
Sbjct: 661  VRELMAKRHLAENMLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLAQQIADPN- 719

Query: 722  GLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTW 781
                +  Q  RLES++ LVQIVTIHKSKGLEYPLV+LPF+ +YR   +  Y+D ES    
Sbjct: 720  --SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRESFDAV 777

Query: 782  VDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPL--RNGNSSQEPTSAHRS 839
            +DL+  E ++  A+ ERLAEDLRLLYVALTR+V+ C +G+APL  R G+ S E +  H S
Sbjct: 778  LDLSKAESSVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGDKSGE-SDFHLS 836

Query: 840  AMGFLLQDGQEGGIADLQQALLKQC-ENLPDVVQCPPPKRFEQAYQPPQLDERELTAREL 898
            A+G L+Q G+    A L+Q +   C E++   +  PP       +Q P   E EL AR++
Sbjct: 837  ALGRLIQLGEPKDAAGLRQCIESLCGEHVALHIPSPPD---NSRWQMPDWRESELEARQI 893

Query: 899  SQAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSI- 957
             + I   WRVTSYSGL         D + +L        D+D+A    GA    VE ++ 
Sbjct: 894  LRTIADDWRVTSYSGLQQHGQSIAQDLMPKL--------DIDAA----GAGSVPVEPALT 941

Query: 958  -FNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTV 1016
               FPRGA PGTFLHSLFEE+DF Q    E     +L++++S   +++W PVL + +  +
Sbjct: 942  PHQFPRGASPGTFLHSLFEELDFTQPVSDE----WVLKMLQSGGYDAQWQPVLTEWIRAI 997

Query: 1017 LSTPLDGKALRLQQIMAAQRLTELEFLLPI-EVLDAPTLNRITQRHDPLSAHAGDLGFHA 1075
            L  PL  + L L Q+ A  +  E+EF LPI   L A  L+ + + +DPLSA    L F  
Sbjct: 998  LHAPLTAEGLSLSQLTAKDKQVEMEFYLPIVSPLRADALDAVIREYDPLSAGCPPLNFRQ 1057

Query: 1076 VQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALA 1135
            VQGMLKGFIDLVF+++GRYY+LD+KSN LG++  AY  Q + SAM  HRYDLQYQ+Y LA
Sbjct: 1058 VQGMLKGFIDLVFRHEGRYYLLDYKSNWLGENSEAYTQQAMASAMQMHRYDLQYQLYTLA 1117

Query: 1136 LHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRGDQ-GVFHTKPSLALLDELDGLIA 1190
            LHR+LR R+A Y YE+HFGGV YLFLRG+D    + G+F T+P  AL++++D L A
Sbjct: 1118 LHRYLRHRIAEYRYEEHFGGVIYLFLRGVDAADPRSGIFSTRPHAALIEKMDNLFA 1173