Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., ATP-dependent helicase from Bifidobacterium breve UCC2003

 Score = 50.4 bits (119), Expect = 4e-10
 Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 14/133 (10%)

Query: 344 KSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL 403
           K++   + FDD+L  +   +D+  +     +IR+      +DE+QD  PLQ+ + + L+L
Sbjct: 192 KTSQGEIDFDDILLLVCHIMDDFPEA--AAQIRSSIGWLTVDEYQDVSPLQHRLLN-LWL 248

Query: 404 D--------YPQCGLLMIGDPKQAIYAFRGADIFTYIKARNQ---VNAHYTLGTNWRSSA 452
                         + ++GDP Q IY+F GA  +  ++  ++   ++A   L T++RS+ 
Sbjct: 249 GGGGPNGKAAMNRNVCVVGDPAQTIYSFAGASSWHLLQFADEFGPLSADINLNTDYRSTP 308

Query: 453 AMVAAVNQVFSSA 465
            +V   N+V ++A
Sbjct: 309 EVVGLANRVLAAA 321



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 26/95 (27%)

Query: 740 VQIVTIHKSKGLEYPLVFLPFVMSYRESSEG--KYYDAESATTWVDLTGNEEALAKADQE 797
           V I TIH +KGLE+  VFL         SEG   Y   E                    E
Sbjct: 438 VMISTIHAAKGLEFKHVFLV------GCSEGLLPYGSPEPG------------------E 473

Query: 798 RLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQE 832
            L E+ RL+YV +TRA     +  A  ++G  +Q+
Sbjct: 474 TLEEERRLMYVGVTRAEDSLHLSYARTKDGYGAQQ 508



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 19 LHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELR 78
          L+G   I A AG GKT T+        + + CA          ++ L VTF+  A AE+R
Sbjct: 22 LNGPVRIIAGAGAGKTRTVTRR-----IAYACA----TGAWKPERALAVTFSVKAAAEMR 72

Query: 79 DRIRR 83
           R+ +
Sbjct: 73 ARLEQ 77