Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1263 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  694 bits (1791), Expect = 0.0
 Identities = 488/1269 (38%), Positives = 682/1269 (53%), Gaps = 120/1269 (9%)

Query: 9    AVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVT 68
            A+ LD+L  P  G+RLIEASAGTGKTYTI+GLYLRL+LG G +E     PL+ +QILVVT
Sbjct: 7    ALPLDSLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSE-----PLNCEQILVVT 61

Query: 69   FTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLS--AERQM 126
            FT AAT ELRDRIRRR+  A   F     +DP +++L  +  +   A++L     A + +
Sbjct: 62   FTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSL 121

Query: 127  DEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLAS 186
            DEAAIFTIHGFCQR+L   AFES   FE++F  D+S      V D+WR   YPLP  LA 
Sbjct: 122  DEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLAQ 181

Query: 187  EVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIKQHWLVEREE 246
             +   +  P  L+ ++   L     K   P+     A L ++    +   K  W   R+ 
Sbjct: 182  IIASEFGDPDGLVKQLRALLGASEAKPLKPVQP--FARLAESLSQSVQRFKLAWPRGRDA 239

Query: 247  I-----EPAVTGSDLHKNSQN--ALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAK 299
            +        + G    K S N   L      LD +  +  H L     LE  + S L  K
Sbjct: 240  LLELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFL-AFGHGLPPLKVLEALSLSEL--K 296

Query: 300  SKKG----NPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDL 355
              KG    +  +  L + +E   A   ++K   L  A        AK K   + L+ DDL
Sbjct: 297  LNKGGVLPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDDL 356

Query: 356  LTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLY-----LDYP---- 406
            LT L+AA+  +    L + + + +PVA+IDEFQDTDPLQ++IFS +Y     LD      
Sbjct: 357  LTTLAAAMQANPD-TLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLDTQNSAA 415

Query: 407  --------QCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAV 458
                    +  LLMIGDPKQAIYAFRGADI+TYI+AR Q  AHY L TN+RSS  +VA V
Sbjct: 416  EPKPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVAGV 475

Query: 459  NQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDY 518
            N +F+  + PFI S  IPF PV     A  +    +     AL      + +   +K   
Sbjct: 476  NHLFAQHSDPFI-SQSIPFDPVKTPASAAAKQLVEQAPNSAALRLKLLSEGETGLNKASA 534

Query: 519  YAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIA 578
               +AE  AA+I  +LT +A+G     +G  I A D+A+LVR  NEA +++ ALS++ I 
Sbjct: 535  RQTLAEDTAAEITRLLTQAANGQCRTPKGPLI-AKDIAILVRDRNEAAVMKTALSKRQIG 593

Query: 579  SVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENE 638
            +V+LS RDSVF +  A+++  +L A+  P+DER LR+A+A+ L    A ++ A N DE +
Sbjct: 594  AVFLS-RDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQ 652

Query: 639  WEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAE-------------------S 679
             ++L+ +F +  ++W +RG++P L ++     +  R L                     S
Sbjct: 653  RQRLLEQFFELHQIWQKRGIMPALLSLANATQMVARLLHSPASTSTDQAEQDAAAQLEAS 712

Query: 680  EGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRL 739
             GER LTD+ H++ELLQQ   EID    LL +  Q + D      G+DEQ  RLESE+ L
Sbjct: 713  NGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDNT----GTDEQQLRLESEQNL 768

Query: 740  VQIVTIHKSKGLEYPLVFLPFVMSYRESSEGK----YY----DAESATTWVDLTGNEEAL 791
            VQIVTIHKSKGLEYP+ F+PFV   R++        Y+    D      W DL G +E  
Sbjct: 769  VQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVW-DLEGTDEGW 827

Query: 792  AKADQERLAEDLRLLYVALTRAVYGCFIGIAP----LRNGNSSQEPTSAHRSAMGFLL-- 845
             +A QE LAEDLRLLYVALTR VY C++ IA     L+ G  SQ     H +A+G+LL  
Sbjct: 828  EQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKTGLKSQ----LHETAIGYLLGI 883

Query: 846  --QDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQA--YQPPQLDERELTARELSQA 901
               D     + +  +AL+   E+    +         +A   Q    +   L+AR++S+ 
Sbjct: 884  TDTDCDFSRLQNAAKALVAGLESSQPAISIEVVADDIEANKLQTGGANTHTLSARKVSRQ 943

Query: 902  IDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSA------------QERDGAA 949
                WRV SYSGLV  + HA+  P  +  +  V G D  ++            +  D  A
Sbjct: 944  YRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAIDPIWPDHWWQEAADLQA 1003

Query: 950  LESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVL 1009
               + R  F+F RGA  G+F+H + E +DF Q+    P    + + M    I  EW PVL
Sbjct: 1004 QPLLNR--FSFERGANAGSFMHLVLELIDFTQAQIDLPRE--LPKAMLQYGIAPEWQPVL 1059

Query: 1010 QQLVDTVLSTPL-----DGKALRLQQIMAA----QRLTELEFLLPIEVLDAPTLNRITQR 1060
            +     VL  PL     D + +  +  +AA      L E+EF LP+  L    LN++  +
Sbjct: 1060 EDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNRLKDTELNQLLGQ 1119

Query: 1061 HDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAM 1120
            +     +  +L F  +QGMLKGFIDL F+YQG++Y+ D+KSNHLGD+  AYH   L  A+
Sbjct: 1120 Y----GYDTELQFDELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAI 1175

Query: 1121 AEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGR-GDQGVFHTKPSL 1179
             +HRYDLQY +Y+LALHR+L  RL +Y+Y+ H GG +YLFLRGM  +    G+++ KP  
Sbjct: 1176 GDHRYDLQYILYSLALHRYLAMRLPNYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPK 1235

Query: 1180 ALLDELDGL 1188
            AL+  LD L
Sbjct: 1236 ALILALDAL 1244